Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22240 363 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 353 / 3e-122 FIB fibrillin (.1) AT2G35490 220 / 4e-69 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT2G42130 57 / 1e-09 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) AT3G58010 54 / 3e-08 PGL34 plastoglobulin 34kD (.1) AT5G09820 53 / 7e-08 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT2G46910 49 / 1e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 44 / 4e-05 plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 43 / 0.0002 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G23400 42 / 0.0003 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001099 [exp] 576 / 0 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 218 / 2e-68 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 218 / 3e-68 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10033514 [exp] 67 / 2e-12 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 67 / 2e-12 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10012003 [exp] 61 / 4e-10 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10020982 [exp] 56 / 9e-09 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10016263 [exp] 55 / 2e-08 AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10004171 [exp] 53 / 6e-08 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G003200 [exp] 368 / 7e-128 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G137900 [exp] 246 / 2e-79 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G095900 [exp] 237 / 7e-76 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 62 / 7e-11 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.006G192200 [exp] 61 / 1e-10 AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.001G209600 [exp] 56 / 5e-09 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.016G045900 [exp] 55 / 2e-08 AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.003G020700 [exp] 51 / 3e-07 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.002G183700 [exp] 45 / 2e-05 AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10014790 pacid=23150174 polypeptide=Lus10014790 locus=Lus10014790.g ID=Lus10014790.BGIv1.0 annot-version=v1.0 ATGGCATCCACCACCTCTCGATTGATTCTTCCATGCCATACTCTCTCCACCACTCCTCAAAACACCTTCTTCGCTACCTATGCTCGTCGTCCGGCCATCC ATTTCCCCGCTGCGGCCTTAACTCTGCAGCAGCTCTCATCCAAACAGTTATTCCGCAACTCACGCCCTCATGTCTTGGTTCGTGCAGCCGGAGAAGGGGT GTCCTCCTCGTCGTCCTCCTCCTCCTCGTCGACCCCAGGTCAGGCATCAACGGTCACCGTTCAATCGGAGTCAGAGACAGGAAAGTTGAAGAAACAGTTG GTGGATTGCTTTTACGGTACGGACCGTGGGTTGAGAGCAAGCAGCGAAACCAGAGCTGAGATTGGGGAGCTCATCACCCAGCTGGAATCAAAGAACCCTA CCCCTTCACCTACCGACGCTTTACCTCTTCTCAAGGGCAAGTGGATTCTCTCGTACACGTCTTTCCCGGGGCTGTTCCCTTTGCTGGCGAGGGGGGCTCC TTCTCTGTTGATGGTGGATGAAATATCTCAAACCATAGATTCCGAGAATTTCACCGTCCAGAACTCTGTTCGATTTGCTAGCCCTTATGCTACCACTTCC ATCACCACCAATGCCAAATTCGAAGTTAGAAGCCCTAAGCGTGTCCAGATAAAGTTTGAAGAAGGGGTGATTGGGACTCCTCAGCTGACTGATTCCATAG TATTACCAGAGAGCGTGGAATTTCTGGGACAGAAGATAGACCTTACCCCTTTCAAAGGGTTGATCACCTCTGTTCAGGACACTGCTTCCACCGTTGCCAA GACCATATCCAGCCAGCCACCCTTCAAGTTTTCCATCCCAAACACTAGCACTGCAGATTCTTGGTTACTCACCACCTACCTCGACCAAGACCTTCGCATT TCGAGAGGGGATGCTGGCAGCGTCTTCGTGCTTCTTAAAGAAGGAAGCCCTCTCCTTGCTTCCCTTTGA
AA sequence Show only first row Show all	>Lus10014790 pacid=23150174 polypeptide=Lus10014790 locus=Lus10014790.g ID=Lus10014790.BGIv1.0 annot-version=v1.0 MASTTSRLILPCHTLSTTPQNTFFATYARRPAIHFPAAALTLQQLSSKQLFRNSRPHVLVRAAGEGVSSSSSSSSSSTPGQASTVTVQSESETGKLKKQL VDCFYGTDRGLRASSETRAEIGELITQLESKNPTPSPTDALPLLKGKWILSYTSFPGLFPLLARGAPSLLMVDEISQTIDSENFTVQNSVRFASPYATTS ITTNAKFEVRSPKRVQIKFEEGVIGTPQLTDSIVLPESVEFLGQKIDLTPFKGLITSVQDTASTVAKTISSQPPFKFSIPNTSTADSWLLTTYLDQDLRI SRGDAGSVFVLLKEGSPLLASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	0	1
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	1.0	0.9151
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	2.2	0.8804
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	3.7	0.8974
AT3G09032			unknown protein		Lus10027777 [exp]	6.3	0.8636
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	7.7	0.8830
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Lus10042498 [exp]	7.9	0.8178
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	7.9	0.8830
AT3G60520			unknown protein		Lus10028179 [exp]	8.4	0.8630
AT4G17440			Protein of unknown function (D...		Lus10004378 [exp]	8.4	0.8530
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	8.8	0.8771

Compare expression of checked genes

Lus10014790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.