Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48470 176 / 4e-51 EMB2423 embryo defective 2423 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001100 [exp] 280 / 4e-90 AT3G48470 735 / 0.0 embryo defective 2423 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090700 [exp] 206 / 9e-62 AT3G48470 1070 / 0.0 embryo defective 2423 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014791 pacid=23150206 polypeptide=Lus10014791 locus=Lus10014791.g ID=Lus10014791.BGIv1.0 annot-version=v1.0 ATGCAGGGTTTCGATAAGAAGAGGCAGGGTGTTGACTTTCTTGGCAGAGATTTCATCGTACTCGGAAAACTTATCTACATGCTTGGTGTCTGCATGAGAT GTGCCTCTCTGCACCCAGAGGCTTCTGCTTTAGCCTCCCCACTTCTGGAGATGTTAAGGATGAGAACAGCGGTTACTGATAGTGTTCGACCTGACAACAG GGAGATATGCGGTCGCAAAGAAGCATACGTTAGGAAATCTGTGCTCTTTGCCGCCTCATCCATATTAGTATCCCTGCATCCATCATTCATTGCATCATCT ATAACCACGGGAAATGGGGAAGTGGCAAATGGTCTCGAATGGATACAGACATGGGCCATTGGAATCACGGAGTCGGATGCAGATAGAGAATGTTACATGA ATGCTGTTCTGAGATCTGTGTTCATGTCTTCAGATGGCCATGTCATGCCTCCAGCTTCATGCGGAAATGGCTCTGCAAGTTTCCAGAGCATTGGAATCCA CAGAAAATGCATCCAGACCAACCCGAAAAGTGGTGGCATCAGCCTTCATCCCTCCAATGTGCAGTTGGGAACCATCAAAATCCCACACTCAAATTTGAAG TACTAG
AA sequence Show only first row Show all	>Lus10014791 pacid=23150206 polypeptide=Lus10014791 locus=Lus10014791.g ID=Lus10014791.BGIv1.0 annot-version=v1.0 MQGFDKKRQGVDFLGRDFIVLGKLIYMLGVCMRCASLHPEASALASPLLEMLRMRTAVTDSVRPDNREICGRKEAYVRKSVLFAASSILVSLHPSFIASS ITTGNGEVANGLEWIQTWAIGITESDADRECYMNAVLRSVFMSSDGHVMPPASCGNGSASFQSIGIHRKCIQTNPKSGGISLHPSNVQLGTIKIPHSNLK Y

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10014791 [exp]	0	1
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10028482 [exp]	12.3	0.6307
					Lus10003443 [exp]	69.9	0.4982
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023079 [exp]	79.8	0.5072
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	90.4	0.4797
					Lus10012326 [exp]	115.9	0.4629
					Lus10037861 [exp]	159.9	0.4566
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	160.4	0.4566
					Lus10017842 [exp]	160.9	0.4566
					Lus10036152 [exp]	161.4	0.4566
					Lus10003272 [exp]	161.8	0.4566

Compare expression of checked genes

Lus10014791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.