Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50320 1030 / 0 EAST1, AtELP3, HAC8, ELO3 ,HAG3 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001102 [exp] 1088 / 0 AT5G50320 1080 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090500 [exp] 1051 / 0 AT5G50320 1065 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1) Potri.012G092800 [exp] 1048 / 0 AT5G50320 1031 / 0.0 HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 3, HISTONE ACETYLTRANSFERASE 8, ELONGATA 3, enhancer-of-asymmetric leaves-two 1, Elongator protein 3, radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10014792 pacid=23150214 polypeptide=Lus10014792 locus=Lus10014792.g ID=Lus10014792.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGACCGTGGTGGAGACGAGTAAGAAGCAACCGAGGCCGGGTCGGGGCGGATTCCAAGCTCATGGCCTGACGGAGGAAGAAGCTAGAGTGA GGGCCATAGCGGAAATCGTGAACTATATGGTGGAGCTTTCCCGCAAGAATCAAACAGTCGACCTCAACGCAATCAAATCCGCTGCCTGCCGGAAGTATGG GCTTTCTAGAGCACCGAAGCTGGTGGAGATGATTGCGGCTCTCCCGGAGTCCGACCGTGAGTCGCTACTGCCAAAGCTCAGAGCCAAGCCGGTCAGAACT GCCTCAGGGCTTGCTGTTGTCGCCGTCATGTCGAAGCCGCACCGTTGTCCTCATATTGCGACGACGGGCAACATTTGTGTTTATTGCCCTGGTGGACCGG ACTCCGATTTTGAGTATAGTACTCAGTCGTATACTGGTTACGAGCCGACTAGCATGCGAGCCATTCGAGCTAGGTATAACCCATACGTTCAAGCTAGGAG CAGGATTGATCAGCTTAAGCGCTTGGGTCACAGCGTTGATAAGGTTGAGTTCATATTGATGGGTGGCACATTCATGTCACTAGCAGCAGACTATCGTGAT TACTTTATAAGAAACCTCCACGATGCTCTATCTGGACACACTTCTGCCAATGTTGAAGAGGCAGTGGCCTACTCTGAACATGGTGCAACAAAATGTATTG GCATGACAATCGAGACGAGACCCGATTATTGTCTTGGACCACACTTGAGGCAGATGCTTCTTTATGGCTGTACAAGATTGGAGATCGGTGTTCAAAGCAC ATATGAAGATGTTGCACGGGACACCAACAGAGGACACACTGTAGCTGCTGTTGCGGATTGTTTTTGTTTGGCCAAGGACGCTGGTTTCAAGGTTGTTGCG CATATGATGCCTGATCTTCCCAATGTGGGTGTTGAGAGAGACATGGCGAGTTTTCGTGAATTTTTTGAAAGCCCTTCATTTAGAGCCGATGGACTAAAAA TCTATCCTACACTTGTCATCCGCGGAACTGGGCTGTACGAACTTTGGAAAACTGGCAGATACAGGAATTATCCACCTGAGCAACTAGTAGATATTGTAGC AAGGATCTTAGCCTTGGTACCACCTTGGACACGGGTTTACAGAGTTCAGCGTGATATTCCCATGCCTTTGGTTACATCTGGTGTTGAAAAAGGAAATCTA CGTGAGCTAGCGTTAGCGCGGATGGATGATTTGGGCTTGAAATGCCGAGACGTCCGCACACGCGAGGCTGGCATTCAGGATATTCATAACAAGATAAAAC CTGATGAGGTTGAGCTTGTGCGCCGTGATTACACCGCTAACGAAGGCTGGGAAACATTCCTATCATACGAGGATACACGCCAGGACATTCTTGTAGGGCT TCTGAGGTTGCGTAAATGCGGCAGAAATGTAACGTGCCCTGAGCTTACAGGGCGGTGCTCCATCATCCGTGAACTCCATGTTTATGGGACTGCAGTTCCT GTTCATGGGCGTGAAGCAGACAAGCTGCAGCACCAGGGATACGGCACACTTCTGATGGAAGAGGCGGAGAGGATAGCTTCGAGGGAACATAGATCAACTA AAATAGCTGTAATCTCCGGTGTAGGAACCCGACATTACTATAGGAAATTAGGCTATGAACTTGAAGGCCCTTACATGGTCAAATACCTAGCTTAA
AA sequence Show only first row Show all	>Lus10014792 pacid=23150214 polypeptide=Lus10014792 locus=Lus10014792.g ID=Lus10014792.BGIv1.0 annot-version=v1.0 MATATVVETSKKQPRPGRGGFQAHGLTEEEARVRAIAEIVNYMVELSRKNQTVDLNAIKSAACRKYGLSRAPKLVEMIAALPESDRESLLPKLRAKPVRT ASGLAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLAADYRD YFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLLYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVA HMMPDLPNVGVERDMASFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILALVPPWTRVYRVQRDIPMPLVTSGVEKGNL RELALARMDDLGLKCRDVRTREAGIQDIHNKIKPDEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELTGRCSIIRELHVYGTAVP VHGREADKLQHQGYGTLLMEEAERIASREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	0	1
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	4.2	0.9336
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	4.5	0.9295
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	4.8	0.9395
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020916 [exp]	5.3	0.9228
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	7.3	0.9300
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	11.0	0.9243
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	12.4	0.9110
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	12.6	0.9151
AT2G40360			Transducin/WD40 repeat-like su...		Lus10023107 [exp]	13.7	0.9176
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	15.0	0.9119

Compare expression of checked genes

Lus10014792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.