Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23260 50 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT3G06240 49 / 4e-07 F-box family protein (.1) AT3G17530 43 / 6e-05 F-box and associated interaction domains-containing protein (.1) AT1G13200 42 / 8e-05 F-box and associated interaction domains-containing protein (.1) AT1G25141 42 / 9e-05 F-box associated ubiquitination effector family protein (.1) AT3G17540 41 / 0.0003 F-box and associated interaction domains-containing protein (.1) AT3G22700 39 / 0.0008 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001105 [exp] 365 / 6e-128 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10023370 [exp] 59 / 2e-10 ND 37 / 0.008 Lus10027824 [exp] 57 / 1e-09 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10023372 [exp] 57 / 2e-09 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10018968 [exp] 54 / 5e-09 ND 38 / 0.004 Lus10038606 [exp] 53 / 2e-08 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10013988 [exp] 52 / 1e-07 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018095 [exp] 50 / 2e-07 ND 49 / 4e-06 Lus10037892 [exp] 49 / 4e-07 AT3G06240 107 / 7e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207500 [exp] 52 / 6e-08 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 51 / 1e-07 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G170300 [exp] 42 / 0.0001 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 41 / 0.0002 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 41 / 0.0002 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 39 / 0.001 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 39 / 0.001 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014793 pacid=23150190 polypeptide=Lus10014793 locus=Lus10014793.g ID=Lus10014793.BGIv1.0 annot-version=v1.0 ATGAGTGAGGTTTACAGTTTGAGGAACGATTCATGGAGGAAACTGGAAGGCGGATTCGCTCATTCGCTTCTCTACAGCATTCCCGATTGCCAAGACGGGA GATTCTACTGGTGGGATGACGGCCAGGAGGAAGGTTATACGGATTTCGTTTTCTTTGATATGAAGAGTGAAGTGTTTGAAACAATCCAAGTGCCTAACCC GGCCGAGATTTCATCCAAATTCGCCATCCGATCAGTTTCCATGGTGAAAGGGTCTGCAGTGGCCATATTCTCTGACATTGAAACTGTGGAAGTAGCCAAT TCAATGGAGATATGGATGGCGATGAAGCTGGGAGGTGCATGGACGAAGCTGTGGAGCATCGGAAGCAACCTGGGGATGAAGTGCGTGCATCCAGTTGGGA TGTGGAGGAATGGTGAGTGTTTCTTGCAGAGGTATGATAATGGTGAGCTCGTCGTCTTCAATCCCGAAACTGGAGATATTAGGGAGCTTAAGATTCAAGG GGAATGGCAGTTCTTTCAACTTGTTCCTTATGCTCCATCACAGATTCGCCTGCTGGATTTCTCATGA
AA sequence Show only first row Show all	>Lus10014793 pacid=23150190 polypeptide=Lus10014793 locus=Lus10014793.g ID=Lus10014793.BGIv1.0 annot-version=v1.0 MSEVYSLRNDSWRKLEGGFAHSLLYSIPDCQDGRFYWWDDGQEEGYTDFVFFDMKSEVFETIQVPNPAEISSKFAIRSVSMVKGSAVAIFSDIETVEVAN SMEIWMAMKLGGAWTKLWSIGSNLGMKCVHPVGMWRNGECFLQRYDNGELVVFNPETGDIRELKIQGEWQFFQLVPYAPSQIRLLDFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	0	1
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	2.4	0.9385
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	3.3	0.9481
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	4.7	0.9461
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	4.9	0.9360
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	6.0	0.9448
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	8.1	0.9320
AT5G65495			unknown protein		Lus10002656 [exp]	8.1	0.9391
AT5G41810			unknown protein		Lus10001907 [exp]	8.2	0.9412
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	8.9	0.9271
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	9.5	0.9384

Compare expression of checked genes

Lus10014793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.