Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40710 241 / 4e-80 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G63280 241 / 7e-80 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001106 [exp] 282 / 4e-97 AT5G63280 221 / 5e-73 C2H2-like zinc finger protein (.1) Lus10014570 [exp] 231 / 4e-76 AT5G40710 254 / 5e-85 zinc finger (C2H2 type) family protein (.1) Lus10032116 [exp] 230 / 1e-75 AT5G40710 289 / 3e-98 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090300 [exp] 288 / 1e-98 AT5G63280 320 / 2e-110 C2H2-like zinc finger protein (.1) Potri.001G336500 [exp] 253 / 9e-85 AT5G40710 343 / 1e-119 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014794 pacid=23150168 polypeptide=Lus10014794 locus=Lus10014794.g ID=Lus10014794.BGIv1.0 annot-version=v1.0 ATGGAGAAATTTTTGCCGTCGGCGGTGATTCTTCTCTTGGCATCGACCTTCTTCTCGCAAGCACTCTGCCAGGAAGTTGGGGAGATCGGAGGTGATCGAA TCACGGAGAAACAGTCAGTCCATGAGCACCAAGTCCATTGCTCGAGAGAACGAAGCAGGGCTGCCTGGAAAATCATAGAAGAGTATTTGATGCCATTTGT GGAACAAGAAAGGTACCAGATTCCCACCAATTGCAGACTTCATCCCAGCAATGATCTGTTCAGGGATCAAGAGCAGCACAAGATTAATTATGACTTCAAC CAGTGGCAGTGTGGATACTGTAAGAAAAGTTTCCGTGCTGAAAAATATCTGGATCAGCATTTTGACAGCATGCACTTCGATCTTCTCAATTTCACTGACA GTAGGTGCTTAGCTGACATATGTGGTGCCTTGCACTGTGATTCTGTGATGGACTCTAAGTCAGTAAAAAAGATTAGGTGCAACCCTGCTGCTGCTTCGAA GAATCACCACCTTTGTGAGAGTCTCGCAGATAGTTGTTTTCCTCTTATTCTCGGCCGATCAGCTGCTGGCCTACATGATCTGTTTCTGCGCCAATTTTGT GATGCTCTGACTTGCAAAGGAAAGAAAAAACTTTTTCCTAAAGGTGGTAAGGTAAGTTTTAATGACAATTTGCAGCCATTTGGCATAGACAATCAAGTTG GTACTTGA
AA sequence Show only first row Show all	>Lus10014794 pacid=23150168 polypeptide=Lus10014794 locus=Lus10014794.g ID=Lus10014794.BGIv1.0 annot-version=v1.0 MEKFLPSAVILLLASTFFSQALCQEVGEIGGDRITEKQSVHEHQVHCSRERSRAAWKIIEEYLMPFVEQERYQIPTNCRLHPSNDLFRDQEQHKINYDFN QWQCGYCKKSFRAEKYLDQHFDSMHFDLLNFTDSRCLADICGALHCDSVMDSKSVKKIRCNPAAASKNHHLCESLADSCFPLILGRSAAGLHDLFLRQFC DALTCKGKKKLFPKGGKVSFNDNLQPFGIDNQVGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	0	1
AT4G10930			unknown protein		Lus10023068 [exp]	2.0	0.9176
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	2.0	0.9260
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	2.6	0.9342
AT5G65540			unknown protein		Lus10025712 [exp]	3.5	0.9122
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	3.9	0.9252
AT4G02715			unknown protein		Lus10006911 [exp]	5.7	0.9096
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10011634 [exp]	7.1	0.9133
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	7.7	0.9068
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	8.1	0.9095
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	9.6	0.8998

Compare expression of checked genes

Lus10014794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.