Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18030 338 / 6e-120 ATHAL3A HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) AT1G48605 327 / 1e-115 ATHAL3B HALOTOLERANCE DETERMINANT 3B, HALOTOLERANCE DETERMINANT 3, Flavoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034286 [exp] 426 / 3e-154 AT3G18030 339 / 4e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10017923 [exp] 232 / 2e-73 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G089600 [exp] 358 / 2e-127 AT3G18030 348 / 2e-123 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02441 [flax] [poplar] Flavoprotein Flavoprotein
Representative CDS sequence Show only first row Show all	>Lus10014795 pacid=23150171 polypeptide=Lus10014795 locus=Lus10014795.g ID=Lus10014795.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGAGAAAGAGAGTTGGTTCATTCAACCGCAGAGCCCAGAAAGCCGAGGATTCTGCTTGCGGCTAGTGGGAGTGTGGCTGCCATCAAGTTTG CAAACCTCTGCCACTGTTTCTCCGATTGGGCTGAGGTGAAAGCGGTTGCTACTAAAGCTTCTCTACATTTCATTGACAGAGCTGCACTTCCCAAGGATGT GCTTCTTTACACAGACGAGGATGAATGGTCGACTTGGAGCAAGATTGGGGATAGTGTGTTGCACATTGAACTCCGCAGATGGGCAGACGTTATGGTTATT GCCCCACTATCAGCCAATACCCTCGGAAAGATTGCTGGCGGGTTGTGTGATAACCTGCTGACTTGTGTTGTGAGAGCGTGGGACTATGAGAAGCCTCTGT TCATAGCACCAGCTATGAACACATTCATGTGGAGAAACCCATTCACAGAAAGGCATCTGATATCCGTAGATGAAATTGGGATTACAATGATCCCACCTGT ATCAAAGAAGCTGGCTTGTGGAGATTATGGTACCGGTGCAATGGCAGAACCTTCTGGGATAAATTCAACTGTAAGGCTGTTCTTACAGTCGAGGAATCAA CAAGGCGAAGGGACAAACAGTTAA
AA sequence Show only first row Show all	>Lus10014795 pacid=23150171 polypeptide=Lus10014795 locus=Lus10014795.g ID=Lus10014795.BGIv1.0 annot-version=v1.0 MAKRERELVHSTAEPRKPRILLAASGSVAAIKFANLCHCFSDWAEVKAVATKASLHFIDRAALPKDVLLYTDEDEWSTWSKIGDSVLHIELRRWADVMVI APLSANTLGKIAGGLCDNLLTCVVRAWDYEKPLFIAPAMNTFMWRNPFTERHLISVDEIGITMIPPVSKKLACGDYGTGAMAEPSGINSTVRLFLQSRNQ QGEGTNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	7.1	0.6663
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	10.8	0.5906
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	13.1	0.6770
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	16.2	0.6096
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	21.9	0.6220
AT3G22430			unknown protein		Lus10021917 [exp]	25.8	0.6210
AT3G11591			unknown protein		Lus10032336 [exp]	44.9	0.5703
AT2G39170			unknown protein		Lus10018298 [exp]	48.0	0.5871
AT3G63390			unknown protein		Lus10024829 [exp]	54.2	0.6012
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10021776 [exp]	55.7	0.6017

Compare expression of checked genes

Lus10014795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.