Lus10014796 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36850 2935 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
AT3G07160 2306 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1)
AT1G05570 1577 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
AT5G13000 1551 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2)
AT1G06490 1520 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
AT3G59100 1518 / 0 ATGSL11 glucan synthase-like 11 (.1)
AT3G14570 1431 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2)
AT4G04970 1408 / 0 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1)
AT5G36870 1398 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1)
AT2G13680 1288 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032463 2406 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1)
Lus10042959 2142 / 0 AT3G07160 2760 / 0.0 glucan synthase-like 10 (.1)
Lus10037469 1556 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10013744 1523 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2)
Lus10031648 1433 / 0 AT4G03550 2827 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Lus10033689 1428 / 0 AT4G03550 2828 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Lus10042478 1424 / 0 AT3G14570 2889 / 0.0 glucan synthase-like 4 (.1.2)
Lus10039828 1395 / 0 AT4G03550 2762 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Lus10040891 1356 / 0 AT2G36850 1124 / 0.0 CHORUS, glucan synthase-like 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G089300 3163 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1)
Potri.001G011900 2378 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
Potri.013G131300 1421 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
Potri.011G052400 1418 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1)
Potri.011G095100 1385 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2)
Potri.005G058300 1323 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Potri.001G230000 1288 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.003G214200 1261 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.001G012200 1250 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2)
Potri.002G058700 1224 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF02364 Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence
>Lus10014796 pacid=23150230 polypeptide=Lus10014796 locus=Lus10014796.g ID=Lus10014796.BGIv1.0 annot-version=v1.0
ATGCCTAGGGTTTACGATAACTGGGATAGGCTGGTGCGAGCCACCTTGAAGCAGGAGCAGCTGAGGAGTGCCGGTCAAGGCCCTGAGAGAACTGGCAGTG
GCATCGCCGGCGCTGTTCCGCCTTCGCTCGTCCACAGTACAAATATTGACGCCATATTGCAGGCCGCAGATGAGATTCAAGCTGATGACCCTAATGTTGC
CAGGATCTTGTGTGAACAAGCATATACTATGGCACAGAATTTAGACCCCAATAGTGGTGGCCGCGGTGTTCTCCAGTTCAAGACTGGGTTGATGTCGGTG
ATCAAGCAAAAGCTTGCTAAAAGAGATGGCACACCAATAGATCGTAATCGTGACATCGAGCATCTGTGGGAATTTTACCAACGTTACAAGAAACGACATA
GAGTGGATGACATCCAGAGAGAGGAACAGAAGTGGGGTGAATCTGGAACATTTACTACAGCTAACCTGGGAGATTTGGAATTGCGTTCTCTAGACATGAA
AAAAGTATTCTCAACTTTGAGGGCCCTGATAGAAGTCATGGAATCACTTTCCAAGGATGCTGATCCTCATGGTGTCGGAAAGCTTATTATGGAGGAGCTA
CGGAGAATTAAAAAAGCTGGGGAACTCACACCATACAACATTGTACCTCTAGACGCCCCATCCTTGGCCAATGCTATCGGAGTTTTCCCTGAAGTGAGAG
GTGCAATATCTGCTATCAGATACACTGAACAGTTCCCTAGGCTTCCTCCTGATCTTGAGATTTCTGGAGAATATGCAGACATGTTCGATCTCCTCGAATA
TGTGTTTGGTTTTCAGAATGGCAATGTGAGGAACCAGCGGGAAAATGTTGTTCTCATGATTGCAAATGCACAGTCGCGACTCGGGATACCTACCCAGGCT
GATCCTAAAATAGATGAAAATGCAATCAATGAGGTTTTCTTGAAGGTGCTGGATAACTATATTAAGTGGTGCAAGTACCTGCGGATACGCCTTGCCTGGA
ACAGTAATCAAGCAGTTAATAAAGAAAGGAAACTCTTTCTCGTTTCATTATACTTTCTCATATGGGGTGAAGCTGCAAATGTTCGATTCCTACCGGAATG
CATTTGTTATATATTTCACCATATGGCAAAAGAGCTTGATGCTGTTCTCGATCATGGAGAAGCTGATCGAGCAACTAGCTGCAAAGATGAAAGTGGTTCT
GTGTCCTTCCTTGACAAAGTGATTTTGCCCATCTATGAAACACTAGCAGCAGAGGTTGAAAGAAATAATAATGGAAAAGCTGCACATTCTGCGTGGAGAA
ACTATGATGATTTCAACGAATACTTCTGGTCTCCTGCTTGTTTTGAGTTGAAATGGCCCATGAACAAAGATTCATCGTTTTTGTTGAAGCCCAAAAAGTG
GAAACGGACTGGAAAAAGCACTTTTGTTGAGCATCGTACGTTTCTTCACTTGTACCGAAGCTTCCACCGACTCTGGATTTTCTTGGCCCTGATGTTCCAG
GCATTGACAATAATAGCCTTCCATCATGGGAAAATCAATTTGGGAACGTTTAAAGTGATCTTGAGTGTTGGCCCATCATTTGCCATAATGAACTTCATCA
AGAGCTGTCTGGATGTGTTGCTTATGTTTGGGGCTTACACGACAGCAAGAGCCATGGCAATTTCCAGGCTGGTTATTAGGTTTTTCTGGGGTGGTTTGAC
CTCTGTGGCCATAACCTCTGCGCTTGGTCTTTGGACTGCTACTGAAATTTCCAATCTGTCATACTCTGAAAGATACTATGTTGGACGTGGACTTTATGAG
AGGTTGAGTGATTACTGCAGTAAGTTGGACCTCATTCAGATTAGACCTCTTGTGAGCCCAACCAACATCATCAGGAATTTTCCAAGTTCAAGGTTGCAAT
ACTCGTGGCATGATTTGGTATCCAAGAGCAATAATAATGCATTGACCATTGTCAGCCTGTGGGCTCCAGTTGTTGCTATCTATCTCATGGACATTCACAT
TTGGTACACACTCCTATCAGCAGTTATTGGGGGAATAATGGGAGCAAGAGATCGTTTAGGGGAGATACGCACACTTGACATGGTCCATAAACGATTTGAG
AGCTTCCCAGCTGCGTTTGTGAAGAATCTGGTCTCTCCCCAAGCGACGAGGTTGCCATTCAATGCACAAGCTCCGCAGGAATCTCAGGACTCGAACAAAG
CATATGCTGCGTTGTTTTCTCCCTTCTGGAATGAAATAATCAAATGTTTGCGAGAGGAAGATTTCATTAGCAACCGAGAAATGGACTTGCTTTCCGTTCC
TAGCAATAAAGGGAGTTTGAGATTAGTTCAATGGCCATTGTTTCTTCTCAGCAGTAAGATATTGCTGGCGGTTGATTTGGCATTGGACTGCAAAGACACA
CAAAGAGATCTGTGGAATAGAGTATGTAAAGACGAGTATATGGCTTATGCAGTTCAAGAATGCTACTATAGTGTTGAGAAAATCTTACATTCCCTGGTCG
ATGGCATTTCAAGTTTGTCGTCTATTGATATCTGCTTCTCATATGGTAGGGTTGAAACGATCTTTCGTGAGATCAACAACAGTATATTGGAGGAATCACT
GGTCATAACAGTGTCACTTAAAAAACTTCCTCTCGTATTGTCGAGATTTACTGCACTCACTGGCCTTCTGATACGTAATGAGACTCCGGATCTTGCTAAA
GGTGCTGCAAACGCTGTGTATCAACTATATGAGGTTGTTACTCATGACTTGCTGTCATCTGATCTGAGAGAGCGTTTCGATACATGGAACATCTTAGCTA
GGGCAAGAAATGAAGGACGCTTGTTTTCTAGGATTGAATGGCCAAGAGATCCAGAGATCAAGGAGCAGGTGAAGCGACTGCACCTTCTTCTTACTGTAAA
GGATTCTGCAGCAAACATTCCGAAGAATCTTGAGGCAAGAAGAAGATTAGAGTTCTTCTCAAATTCACTATTCATGGATATGCCTGCTCCTAAGCCAGTT
TCTGAAATGATGCCCTTCTGTGTCTTCACACCATACTACAGTGAGACTGTACTTTATAGCCTGTCTGAATTGCGGGTAGAAAATGAGGATGGGATCTCAA
CTCTCTTTTATCTACAAAAGATCTTTCCAGATGAGTGGGAGAACTTCTTGGAACGGATTGGTAGAGGAGAGTCCACTGGCGATGCTGATCTCCAAGAAAA
TTCTAGTGATTCTCTGGAACTTCGCTTTTGGGCATCTTATCGTGGCCAGACTCTAGCTAGGACGGTACGTGGTATGATGTACTATAGAAGGGCTTTGATG
TTGCAGAGCTATCTAGAGAGCAGATCATTGGGAGTGGATGATTATTCTCAGACTGGTGCAACAACTGAAGGATTTGGCTTATCACGTGAATCTCGTGCTC
AAGCTGATTTGAAGTTTACTTATGTTGTATCATGTCAAATATATGGCCAACAGAAGCAGCGGAAGGCACCAGAGGCTACTGATATTGCTCTCTTGTTACA
AAGGAATGAGGCACTTCGTGTTGCATTCATCCATGTGGATGAGACCGGTTCTACAGATGGGAAAGTTACGAAGGTATACCACTCGAAGCTTGTGAAAGCT
GATGCTCATGGAAAAGACCAGGAAGTGTATTCGATCAAACTTCCTGGTGATCCAAAGCTTGGAGAAGGGAAACCTGAAAATCAGAACCATGCCATAGTTT
TCACTCGTGGAGAAGCCATTCAGGCCATTGACATGAATCAGGACAACTACTTTGAAGAAGCACTGAAAATGAGAAACCTCCTAGAAGAATTTCGAGCCAA
CCATGGCATCCGGCATCCTACCATTCTCGGTGTGAGGGAGCACGTCTTTACTGGCAGTGTCTCTTCTTTGGCGTGGTTTATGTCTAATCAAGAGACAAGC
TTTGTAACATTGGGTCAAAGGGTCTTGGCAAAACCACTCAAAGTTCGTATGCACTATGGCCATCCAGATGTTTTCGATCGAATATTTCATATAACTCGAG
GTGGTGTTAGTAAGGCGTCGCGTGTTATTAACATTAGTGAAGATATATATGCAGGGTTTAATTCCACATTAAGACAAGGAAATGTTACACACCACGAATA
CATTCAGGTTGGGAAGGGAAGAGATGTTGGTTTAAACCAGATTGCCCTGTTTGAAGGCAAAGTAGCTGGAGGAAATGGGGAACAAGTACTGAGTAGGGAT
GTTTACAGGCTTGGACAACTATTTGATTTCTTCCGGATGCTGTCCTTCTACATCTCATCTGTTGGGTTTTATGTTTGTACAATGATGACCGTTCTAACTA
TTTACATTTTCTTGTACGGAAGAACCTACCTGGCTTTCTCAGGAGTAGACCGAGCTGTTGCACGGGAGGCAAGGATTCTTGGAAACACAGCTCTGGATGC
TGTGCTTAATACCCAGTTCCTGGTCCAGATTGGAGTTTTTACTGCTGTGCCTATGATAATGGGCTTCATCCTTGAATTGGGGTTGTTACAGGCTGTTTTC
AGCTTTATCACCATGCAACTGCAATTGTGTTCGGTCTTCTTCACATTTTCGTTGGGAACAAGAACCCATTATTTTGGTCGGACAATTCTACATGGAGGTG
CAAAATACCGAGCAACTGGTAGAGGTTTTGTTGTCCGGCATATCAAGTTTGCTGAAAATTACAGGCTATACTCGAGAAGCCATTTTGTGAAAGCGCTTGA
AGTTGCACTGCTTCTTATAGTCTACATCGCATATGGATTCACGAGGGGTGGTGCAGTATCTTTTATTTTACTGACACTTAGCAGTTGGTTCCTTGTCATA
TCTTGGCTTTTTGCTCCTTACATATTCAATCCATCTGGTTTTGAATGGCAAAAGACTGTTGAAGATTTTGACAATTGGACCACTTGGCTTATGTATAAAG
GAGGAATTGGTGTGAAGGGAGATCAGAGTTGGGAATCGTGGTGGGATGAAGAGCAGACGCACATTCAAACTTTAAGAGGTCGCATATTGGAGACAATTTT
AACCTTGAGATTCTTCTTGTTTCAATATGGTATTGTATATAAACTCCAGCTCACTGGGAAGGACACATCTCTTGCGATTTACGGTTTCTCCTGGGCGGTA
TTGGTTGGGATTGTCCTGGTCTTCAAGGTCTTTACGTATAGCCCAAAGCGATCCATCAACTTCCAGCTACTGATGAGATTCACGCAAGGGGTGACGTCGA
TGGGGCTAATAGCAGCCCTGTGCCTTGTCGTCGCCTTCACAAATCTGTCGATTACAGATTTGTTTGCAAGCATCCTTGCATTCATTCCAACTGGATGGGC
GATACTATGCCTTGCTATCACGTGGAAAAGAATAGTGAGGAGCTTAGGGTTGTGGGAATCGGTTCGAGAATTTGCGAGAATGTATGATGCTGGGATGGGT
ATGGTTATATTTGCCCCAATAGCATTCCTATCCTGGTTTCCTTTCGTTTCAACCTTCCAGTCACGCCTTCTCTTCAATCAAGCATTCAGTCGGGGTCTCG
AAATCTCGCTTATCCTTGCTGGGAACAAGGCTAACGTCGATATGTGA
AA sequence
>Lus10014796 pacid=23150230 polypeptide=Lus10014796 locus=Lus10014796.g ID=Lus10014796.BGIv1.0 annot-version=v1.0
MPRVYDNWDRLVRATLKQEQLRSAGQGPERTGSGIAGAVPPSLVHSTNIDAILQAADEIQADDPNVARILCEQAYTMAQNLDPNSGGRGVLQFKTGLMSV
IKQKLAKRDGTPIDRNRDIEHLWEFYQRYKKRHRVDDIQREEQKWGESGTFTTANLGDLELRSLDMKKVFSTLRALIEVMESLSKDADPHGVGKLIMEEL
RRIKKAGELTPYNIVPLDAPSLANAIGVFPEVRGAISAIRYTEQFPRLPPDLEISGEYADMFDLLEYVFGFQNGNVRNQRENVVLMIANAQSRLGIPTQA
DPKIDENAINEVFLKVLDNYIKWCKYLRIRLAWNSNQAVNKERKLFLVSLYFLIWGEAANVRFLPECICYIFHHMAKELDAVLDHGEADRATSCKDESGS
VSFLDKVILPIYETLAAEVERNNNGKAAHSAWRNYDDFNEYFWSPACFELKWPMNKDSSFLLKPKKWKRTGKSTFVEHRTFLHLYRSFHRLWIFLALMFQ
ALTIIAFHHGKINLGTFKVILSVGPSFAIMNFIKSCLDVLLMFGAYTTARAMAISRLVIRFFWGGLTSVAITSALGLWTATEISNLSYSERYYVGRGLYE
RLSDYCSKLDLIQIRPLVSPTNIIRNFPSSRLQYSWHDLVSKSNNNALTIVSLWAPVVAIYLMDIHIWYTLLSAVIGGIMGARDRLGEIRTLDMVHKRFE
SFPAAFVKNLVSPQATRLPFNAQAPQESQDSNKAYAALFSPFWNEIIKCLREEDFISNREMDLLSVPSNKGSLRLVQWPLFLLSSKILLAVDLALDCKDT
QRDLWNRVCKDEYMAYAVQECYYSVEKILHSLVDGISSLSSIDICFSYGRVETIFREINNSILEESLVITVSLKKLPLVLSRFTALTGLLIRNETPDLAK
GAANAVYQLYEVVTHDLLSSDLRERFDTWNILARARNEGRLFSRIEWPRDPEIKEQVKRLHLLLTVKDSAANIPKNLEARRRLEFFSNSLFMDMPAPKPV
SEMMPFCVFTPYYSETVLYSLSELRVENEDGISTLFYLQKIFPDEWENFLERIGRGESTGDADLQENSSDSLELRFWASYRGQTLARTVRGMMYYRRALM
LQSYLESRSLGVDDYSQTGATTEGFGLSRESRAQADLKFTYVVSCQIYGQQKQRKAPEATDIALLLQRNEALRVAFIHVDETGSTDGKVTKVYHSKLVKA
DAHGKDQEVYSIKLPGDPKLGEGKPENQNHAIVFTRGEAIQAIDMNQDNYFEEALKMRNLLEEFRANHGIRHPTILGVREHVFTGSVSSLAWFMSNQETS
FVTLGQRVLAKPLKVRMHYGHPDVFDRIFHITRGGVSKASRVINISEDIYAGFNSTLRQGNVTHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRD
VYRLGQLFDFFRMLSFYISSVGFYVCTMMTVLTIYIFLYGRTYLAFSGVDRAVAREARILGNTALDAVLNTQFLVQIGVFTAVPMIMGFILELGLLQAVF
SFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGFTRGGAVSFILLTLSSWFLVI
SWLFAPYIFNPSGFEWQKTVEDFDNWTTWLMYKGGIGVKGDQSWESWWDEEQTHIQTLRGRILETILTLRFFLFQYGIVYKLQLTGKDTSLAIYGFSWAV
LVGIVLVFKVFTYSPKRSINFQLLMRFTQGVTSMGLIAALCLVVAFTNLSITDLFASILAFIPTGWAILCLAITWKRIVRSLGLWESVREFARMYDAGMG
MVIFAPIAFLSWFPFVSTFQSRLLFNQAFSRGLEISLILAGNKANVDM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Lus10014796 0 1
AT3G07160 CALS9, ATGSL10 glucan synthase-like 10 (.1) Lus10042959 2.0 0.9392
AT2G26780 ARM repeat superfamily protein... Lus10036052 2.4 0.9166
AT5G08110 nucleic acid binding;ATP-depen... Lus10007978 3.2 0.8758
AT4G27910 SDG16, ATX4 SET domain protein 16 (.1) Lus10005007 3.6 0.8743
AT2G25170 CKH2, SSL2, GYM... SUPPRESSOR OF SLR 2, GYMNOS, C... Lus10005339 3.9 0.8986
AT3G46220 unknown protein Lus10040874 4.9 0.8745
AT2G16950 ATTRN1 transportin 1 (.1.2) Lus10025083 4.9 0.8766
AT5G01400 ESP4 ENHANCED SILENCING PHENOTYPE 4... Lus10005032 4.9 0.9075
AT1G32490 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3... Lus10031647 8.0 0.8671
AT1G63490 transcription factor jumonji (... Lus10008495 8.1 0.8748

Lus10014796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.