Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53000 483 / 2e-174 AtCKS, KDSB CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040889 [exp] 170 / 2e-52 AT1G53000 147 / 6e-44 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G120100 [exp] 499 / 0 AT1G53000 485 / 3e-175 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.001G400900 [exp] 484 / 8e-175 AT1G53000 481 / 1e-173 CMP-KDO synthetase, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02348 [flax] [poplar] CTP_transf_3 Cytidylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014797 pacid=23150197 polypeptide=Lus10014797 locus=Lus10014797.g ID=Lus10014797.BGIv1.0 annot-version=v1.0 ATGAGCTCTAAATCAATTTGCTCTCCATCTTCACCTGAATCTTCTTCATCACACAAGGCATGGATTGTGCACGGGATACTCGCTGGTGCTGCCATTGCCG CTGCTCTCGCTGCTCGAACTTATCTCGCTGGATCAAGAAAGTTTAGGAGCCGAGTGGTGGGTATAATTCCCGCTCGTTTCGCTTCTTCACGGTTCCCGGG CAAGCCACTCGTCCAAATTCTAGGGAAACCCATGATCCAGAGAACATGGGAGAGGGCTAAACTTGCTACTTCTTTGGATCATCTAGTTGTGGCAACAGAC GATGAAAAAATTGCAGCATGCTGTCGAGGCTTTGGTGCTGATGTTATAATGACTTCAGAATCCTGTCAAAATGGCACTGAGCGCTGCAATGAAGCTCTTC AAAAGCTAGAGAAGAAGTATGATGTTGTTGTCAATATTCAGGGAGATGAGCCTTTGATTGAACCTGAGATTATCGATGGAATTGTGAAAGCACTGCAGGG ATCCCCAGATGCAGTGTTTAGCACTGCAGTAACAGCCTTGAAACCTGAAGATGCATTCGATCCTAACCGTGTGAAATGTGTGGTGGATAACAAAGGTTAT GCCATCTATTTTTCCAGAGGGCTGATTCCGTATAACAAATCAGGAAAAGTCAATCCACAGTTTCCATATTTGCTTCACCTGGGTATTCAGAGTTATGATG CAAAGTTTCTGAAGATATACCCAGAACTTCAACCTACTCCTCTACAACTAGAAGAGGATTTGGAACAGTTGAAGGTCCTTGAGAATGGCTATAAAATGAA GGTAATAAAAGTTGACCATGAAGCTCATGGTATTGATGCCCCAGAAGATGTTGGCAAGATTGAAGCTTTGATGCGTGAGCAAAACTTATCCTAG
AA sequence Show only first row Show all	>Lus10014797 pacid=23150197 polypeptide=Lus10014797 locus=Lus10014797.g ID=Lus10014797.BGIv1.0 annot-version=v1.0 MSSKSICSPSSPESSSSHKAWIVHGILAGAAIAAALAARTYLAGSRKFRSRVVGIIPARFASSRFPGKPLVQILGKPMIQRTWERAKLATSLDHLVVATD DEKIAACCRGFGADVIMTSESCQNGTERCNEALQKLEKKYDVVVNIQGDEPLIEPEIIDGIVKALQGSPDAVFSTAVTALKPEDAFDPNRVKCVVDNKGY AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGIDAPEDVGKIEALMREQNLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10014797 [exp]	0	1
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	8.7	0.8885
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	11.2	0.8878
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	20.0	0.8539
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	23.6	0.8843
AT4G18100			Ribosomal protein L32e (.1)		Lus10009591 [exp]	30.9	0.8713
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Lus10012057 [exp]	32.2	0.8638
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	32.9	0.8760
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	36.4	0.8629
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	44.2	0.8507
AT5G12110			Glutathione S-transferase, C-t...		Lus10036101 [exp]	46.5	0.8598

Compare expression of checked genes

Lus10014797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.