Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33440 590 / 0 Pectin lyase-like superfamily protein (.1) AT4G23820 433 / 3e-149 Pectin lyase-like superfamily protein (.1) AT5G41870 425 / 6e-146 Pectin lyase-like superfamily protein (.1) AT3G62110 409 / 2e-139 Pectin lyase-like superfamily protein (.1) AT3G48950 393 / 3e-133 Pectin lyase-like superfamily protein (.1) AT4G23500 389 / 5e-131 Pectin lyase-like superfamily protein (.1) AT3G61490 383 / 4e-129 Pectin lyase-like superfamily protein (.1.2.3) AT2G23900 373 / 3e-125 Pectin lyase-like superfamily protein (.1) AT1G19170 362 / 1e-120 Pectin lyase-like superfamily protein (.1) AT3G16850 358 / 1e-119 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003589 [exp] 860 / 0 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 417 / 8e-143 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 417 / 1e-142 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 416 / 3e-142 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 397 / 5e-135 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 393 / 8e-133 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 388 / 4e-131 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 388 / 1e-130 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10039279 [exp] 381 / 3e-128 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105800 [exp] 660 / 0 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 658 / 0 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 415 / 5e-142 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 415 / 1e-141 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 413 / 5e-141 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 409 / 2e-139 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 405 / 7e-138 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 403 / 2e-137 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 394 / 2e-133 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.018G062700 [exp] 377 / 2e-126 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10014799 pacid=23150201 polypeptide=Lus10014799 locus=Lus10014799.g ID=Lus10014799.BGIv1.0 annot-version=v1.0 ATGATGACTGAGGAGAAACAGGGCTTCGGCGCCACTATCATGAACGCGATGAAGCTATCGCGTTCGACGCTCCTTTTGTTAGCCGTCGTCGCAGCACTTC TCTGCTTCCAGATCACAACTAGAACAGTGTACCCGATTTGGATCGCCAGGAACCGTGGATCCTTCGAGTCAGACATTCCGCCCGATGCCGGAAGAAGCTG TTCCGGATTCTACGGAAAAATCCCTGCGAGAAAGACGGTGATGTCGATCAAGGATTTCGGAGGGATTGGCGATGGCGAAACCAGCAACACAAAAGCCTTT CAGGAAGCGATTCAACATATGGAGCGGTTCGAGTCAGACGGCGGATCGCAGCTGAATGTGCCCGAGGGGAGGTGGCTTACTGGAAGCTTCAACCTCACCA GCAATTTCACTTTGTTTCTTGAAGATGGCGCCGTGATTTTGGGTTCCCAGACCCAAACAAAATGGCCTATAATAAAGCCATTGCCTTCTTATGGAAGAGG GAGAGAGAGACTGGGAGGAAGACATATTAGCCTTATTCATGGGGACGGTCTCTTTGATGTCGTTATTACAGGACAAAATGGAACAATTGATGGTCAGGGG AAAATGTGGTGGGATTTGTGGTGGAATAGAACGTTGGAGCACACAAGAGGACACCTTGTTGAACTAATGAACTCTCGGAACATCCTTATCTCAAACCTCA CTCTTCGCAACTCTCCGTTTTGGACTGTGCATCCAGTTTACTGCAGTAATGTTGTTATTAGAGACATGACGATCTTGGCGCCACTGAATGCTCCAAATAC GGATGGGATAGATCCAGACTCGAGTAGAAATGTTTGCATTGAGGACTGCTACATTGAGAGTGGAGATGATCTTGTTGCAGTGAAGAGTGGGTGGGACCAT TATGGTATCAAGATGGGCCTTCCGAGCTCTAACATTATAATTAGAAGAATCTCAGGCACCACTCCAACTTGTTCCGGGATCGGAATAGGTAGTGAAATGT CTGGGGGCATTTCGAACGTAATTATTGAGGATCTGCATGTCTGGAATTCGGCAGCTGGTGTGAGGATGAAAACAGATATTGGGAGGGGAGGATATATAGC AAATATTACTATAAGAAATGTAATCATGGAGGGAGTGAAGATACCTATAAAGTTCAGCAGGGGATCGAATGACCATCCCGATGCAGGGTGGGATCGCAAT GCCATTCCAACAGTGAAGGGAGTCGTGATAAGTAATGTTGTCAGTTTGAATGCAGTTAAAGCTCCACAGCTTCTCGGCATTGAGAATGCTCCATTTTCTG GGATATGCCTAAAGAATGTTACTTTGCTAGGATTGAAGAAATCTGGGTCATGGCACTGTGAATTTCTCTCTGGTTTTGCTCAGGATGTTTTCCCATTGCC ATGTCCAGAGTTGCAGAAAGATGATGCGTCTGGGTGCCCGTAG
AA sequence Show only first row Show all	>Lus10014799 pacid=23150201 polypeptide=Lus10014799 locus=Lus10014799.g ID=Lus10014799.BGIv1.0 annot-version=v1.0 MMTEEKQGFGATIMNAMKLSRSTLLLLAVVAALLCFQITTRTVYPIWIARNRGSFESDIPPDAGRSCSGFYGKIPARKTVMSIKDFGGIGDGETSNTKAF QEAIQHMERFESDGGSQLNVPEGRWLTGSFNLTSNFTLFLEDGAVILGSQTQTKWPIIKPLPSYGRGRERLGGRHISLIHGDGLFDVVITGQNGTIDGQG KMWWDLWWNRTLEHTRGHLVELMNSRNILISNLTLRNSPFWTVHPVYCSNVVIRDMTILAPLNAPNTDGIDPDSSRNVCIEDCYIESGDDLVAVKSGWDH YGIKMGLPSSNIIIRRISGTTPTCSGIGIGSEMSGGISNVIIEDLHVWNSAAGVRMKTDIGRGGYIANITIRNVIMEGVKIPIKFSRGSNDHPDAGWDRN AIPTVKGVVISNVVSLNAVKAPQLLGIENAPFSGICLKNVTLLGLKKSGSWHCEFLSGFAQDVFPLPCPELQKDDASGCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33440			Pectin lyase-like superfamily ...		Lus10014799 [exp]	0	1
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	2.4	0.8764
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	2.4	0.8622
AT5G58000			Reticulon family protein (.1)		Lus10035829 [exp]	4.1	0.8804
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	4.6	0.8585
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	9.2	0.8623
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	11.0	0.8572
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	12.0	0.8526
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	12.6	0.8697
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	13.1	0.8433
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	13.6	0.8674

Compare expression of checked genes

Lus10014799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.