Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53800 162 / 2e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003591 [exp] 240 / 1e-76 AT5G53800 238 / 2e-76 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121000 [exp] 196 / 5e-60 AT5G53800 224 / 3e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014800 pacid=23150226 polypeptide=Lus10014800 locus=Lus10014800.g ID=Lus10014800.BGIv1.0 annot-version=v1.0 ATGAGCAGCAATCGGAACGATTCTCTCTCGGAGTGGAACGAGCTGGAAGAAGATAGGAAGTCCAAAGGTAAAGCTCGGCACGAGGGCGATTCTCCGGATG TCGGTGACCGGAAGATCGACGGGAGACGCAGAAGGAAGCGATCAGTTGACAAACCTTCTGATTCAGGTTCCGGAGAAGAGAACGGCGGGAGAGACAGAAG AAAGAGAGAGTCGCGTAAGCGACGCAGCAGTAGAAGCTTGGAGTCGGATTCAGATAGCGACGAGTCTGAGTCATCGAAGTCGGACTCAGAGCCGACGGAG AGTGATAATAGTGAGAGTGAGAGTGAGGAGGAGAGGATGAGGAAAAAGCGGAGGGAGAAGAGGAAGAGGAGGGAGCGGGAGGAAGAGAAGGAGAGGAAGA GGAGAAAAGAGAAGAAGAGAAGGAAAGAGAAAGATAAAGAGAGGGAGAAGCGGAAGAAGAAAGACAAAGATAAGAAAAAGAAGGAGAAAGCCGAGAGAGG GAAGAGAGGCGCCGTTACTGATTCCTGGGGGAAGTATGGCATCATCAGAGAAACTGATATGTGGAACAAGCGTCCTGAATTCAGTGCATGGTTAGCTGAA GTGAAGCAGGTATTCTGTTGCCCCTTCTCCCGTACTGTCTCTTGTCTTGTGAACCTTGAAACCATGTCTAACTGGGAGGAAAAGGAGAAGTTCAAGGATA ACTGGCTAACTCCTAGTCTGCTACATCTTGTTGGGTTGTGTCTAATGACAAACCATGCGTGCAGTTTTATGGAGGATCATAATACAGCCACCTTTCCTTC CAAAAAATATTACAATCTTGATGCGTATTACAAGCGGCAACTATTGAAGGAAATCAAAAGCGGAAAGAAGGTCCAGGAAACTGAACGTACCGTATTCAAT GATGAAGAATTGAAGAGGCAAGAACAGAGACGGGAGCGAGAAAAACAGAAGGAACAAGAGGTCGAAGTGTTGAAACGGTCAATGCAGAGTGGAATGGCAC AAGCAATGAAACACCAGGCCTTACTTAGAGAAGAGATGGCATTGCAGTACAAGCTTGGAAATTACGAGGTAAGAAGCGGTATCCTTTCAAATTGGTTCCC ACTTCGCACTCACATAATCTCGATTGAAAGAAACTAA
AA sequence Show only first row Show all	>Lus10014800 pacid=23150226 polypeptide=Lus10014800 locus=Lus10014800.g ID=Lus10014800.BGIv1.0 annot-version=v1.0 MSSNRNDSLSEWNELEEDRKSKGKARHEGDSPDVGDRKIDGRRRRKRSVDKPSDSGSGEENGGRDRRKRESRKRRSSRSLESDSDSDESESSKSDSEPTE SDNSESESEEERMRKKRREKRKRREREEEKERKRRKEKKRRKEKDKEREKRKKKDKDKKKKEKAERGKRGAVTDSWGKYGIIRETDMWNKRPEFSAWLAE VKQVFCCPFSRTVSCLVNLETMSNWEEKEKFKDNWLTPSLLHLVGLCLMTNHACSFMEDHNTATFPSKKYYNLDAYYKRQLLKEIKSGKKVQETERTVFN DEELKRQEQRREREKQKEQEVEVLKRSMQSGMAQAMKHQALLREEMALQYKLGNYEVRSGILSNWFPLRTHIISIERN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53800			unknown protein		Lus10014800 [exp]	0	1
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	1.0	0.9482
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	1.4	0.9416
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	2.8	0.9243
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	3.5	0.9375
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10013376 [exp]	4.2	0.9006
AT2G25670			unknown protein		Lus10017738 [exp]	5.2	0.9381
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	6.9	0.9029
AT1G27435			unknown protein		Lus10032003 [exp]	8.0	0.8930
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10038367 [exp]	8.8	0.9183
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	8.9	0.9259

Compare expression of checked genes

Lus10014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.