Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 623 / 0 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 234 / 2e-70 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79360 218 / 3e-64 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 211 / 8e-62 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79410 176 / 1e-48 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 162 / 7e-44 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT3G13050 97 / 4e-21 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT2G20780 52 / 5e-07 AtPLT4 Major facilitator superfamily protein (.1) AT1G20840 52 / 6e-07 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT3G51490 51 / 2e-06 TMT3 tonoplast monosaccharide transporter3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013330 [exp] 574 / 0 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10026758 [exp] 215 / 7e-66 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 201 / 4e-58 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10025543 [exp] 127 / 4e-35 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 114 / 5e-28 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10033336 [exp] 93 / 8e-20 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 92 / 2e-19 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 90 / 2e-18 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 87 / 9e-18 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130533 [exp] 669 / 0 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.012G037400 [exp] 235 / 2e-70 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.015G029400 [exp] 234 / 3e-70 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 221 / 1e-65 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.016G039000 [exp] 180 / 5e-50 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 176 / 1e-48 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.007G003000 [exp] 124 / 2e-30 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 102 / 9e-23 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 97 / 4e-21 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 92 / 2e-19 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10014801 pacid=23150169 polypeptide=Lus10014801 locus=Lus10014801.g ID=Lus10014801.BGIv1.0 annot-version=v1.0 ATGCCGCAAGCCGACGACTCAACGATGCCGGCCGACCTGGGGGGTCTCCAAGATCCTCTCCTCCGGCGTCCGGCCGACGGAAAGGTAGTAGAGAGAGTAA CGATAGACAAAATGTTGCAAAAGTACTGCGGGGAATTCGGGCGGTGGCAACTCCGACACTTTGTGTTGACCAGCTTGGCTTGGGCTTTAGAGGCCTTCCA CACCATGGTCATGATCTTCGCCGACAGGGAGCCTGATTTCCGGTGCATCGGTGGGTGCGGCGGGGCGGCGAAAGGAGGGGTTTGTGGATTGGAAAGCGGG TCGTGGGAATGGGTTGGCGGTTCGGGTAGCTCGACGGTGTCGGAGTGGGGGTTGGTGTGTGGAGAGAAGTATAAGGTGGGGTTAGTTCAGGCGGCTTTCT TCGGTGGCTGCATGATTGGTGCAGGGACGTTCGGGCATCTCTCCGATTCGTCACTCGGCCGTAAAGGGTCACTCACCGTAGTATGTCTCCTCAACGCCAT CTTGGGCTGCTTAACTGCACTCTCCCCAAACTACTGGACATACCTCCTCATCCGCATCCTCACGGGTTTCAGCACAGGTGGTGTGGGGTTATGTGCCTTC GTCCTCGCTACCGAGCCCATCGGCCCATCAAAAAGAGGCCCGGCCGGAATGTCCACCTTCTACTTCTTCTCCACCGGAATTGCCATCCTCTCCGGCCTAG CCTACTTCGTCCAATACTCATGGAGGACACTCTACTTGGCCTCCTCAATCCCTTCCTTCCTTTTCCTCCTCCTCGTCGTCCCTTTCGTCACTGAATCCCC TCGATGGTACCTTGTACGCGGCAAGGTCGACCAAGCCATGAAGATCATGCACTCCATCGCCCGTGGCAACGGCCGCCGTCTCCCTGGCGGCGTCGTTTTA GCCCTTGACGACGACCTCGCCAACAACAACAACCATAGTGAAAATGTTAAAGTCGCGTCGGGTTCTTTGGTGGACGTGATGAAGTCGCCGGTAACTCGTA TCCGGCTATTCTTGTCGGTGGCGATCAGCTTCTCGAGCGCGGTGGTCTACTACGGGCTAAGCCTGAACGTGGTCAATTTAGAGACCAACTTGTACGTGAG CGTGCTGGTCAACGCGGTAGCAGAGATGCCGTCCTACACCTTGACCGCGACTTTGTTAGAGTGGTTCGGAAGGAAGCCGCTTGCTATAGGGACGCAGTGG TTTAGCGGCGTGTTTTGCCTGCTGGGATGTTTGGTGGAAGGGGAAGGCGCCGCGTGGAAAGTGGTAAAGATGGTGTGCGGTGTGTTTGGGATATTCGGGA TGGCGGGGACATACAACTTGTTGTTTATCTACGCGGCGGAGCTTTTCCCGACGGTGGTGAGGAACGCGGCGCTTGGTTGCGCTACGCAAGCGTCGCAGTT TGGGGCGATTCTGGCGCCTTTCGTGGTGGTGATGGGTGGGTCGGCGCCGTTTGCGGTGTTCGCGGTGTGCGGTCTCGTGGGTGGGTCGTTGGCGTTTCTG TTGCCGGAGACTTTGAATCAGCCGCTTTATGATACCATGTCTGGGTTGGTGGAAGGTGGGAAAGATGGATCCGTAGTTTGA
AA sequence Show only first row Show all	>Lus10014801 pacid=23150169 polypeptide=Lus10014801 locus=Lus10014801.g ID=Lus10014801.BGIv1.0 annot-version=v1.0 MPQADDSTMPADLGGLQDPLLRRPADGKVVERVTIDKMLQKYCGEFGRWQLRHFVLTSLAWALEAFHTMVMIFADREPDFRCIGGCGGAAKGGVCGLESG SWEWVGGSGSSTVSEWGLVCGEKYKVGLVQAAFFGGCMIGAGTFGHLSDSSLGRKGSLTVVCLLNAILGCLTALSPNYWTYLLIRILTGFSTGGVGLCAF VLATEPIGPSKRGPAGMSTFYFFSTGIAILSGLAYFVQYSWRTLYLASSIPSFLFLLLVVPFVTESPRWYLVRGKVDQAMKIMHSIARGNGRRLPGGVVL ALDDDLANNNNHSENVKVASGSLVDVMKSPVTRIRLFLSVAISFSSAVVYYGLSLNVVNLETNLYVSVLVNAVAEMPSYTLTATLLEWFGRKPLAIGTQW FSGVFCLLGCLVEGEGAAWKVVKMVCGVFGIFGMAGTYNLLFIYAAELFPTVVRNAALGCATQASQFGAILAPFVVVMGGSAPFAVFAVCGLVGGSLAFL LPETLNQPLYDTMSGLVEGGKDGSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	3.6	0.9410
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	4.5	0.9405
					Lus10014817 [exp]	4.5	0.9127
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	5.3	0.9327
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	7.9	0.9233
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	9.2	0.9249
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	9.6	0.9349
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	10.4	0.9056
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	11.0	0.9203
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	11.2	0.9064

Compare expression of checked genes

Lus10014801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.