Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54580 155 / 3e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 104 / 3e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 98 / 3e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 80 / 5e-18 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 76 / 2e-16 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT3G46020 73 / 5e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 77 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 76 / 2e-15 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G39260 70 / 4e-15 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G23830 71 / 7e-15 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003593 [exp] 442 / 4e-156 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 111 / 2e-29 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023758 [exp] 108 / 3e-28 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 83 / 4e-17 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10027035 [exp] 81 / 1e-16 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026364 [exp] 75 / 7e-16 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 74 / 9e-16 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 74 / 9e-16 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 74 / 1e-15 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130300 [exp] 167 / 3e-51 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 165 / 4e-50 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 98 / 4e-24 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 83 / 4e-19 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 83 / 5e-18 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 80 / 7e-18 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.008G022280 [exp] 79 / 1e-17 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 80 / 3e-17 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.010G237200 [exp] 81 / 8e-17 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 76 / 1e-16 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014802 pacid=23150218 polypeptide=Lus10014802 locus=Lus10014802.g ID=Lus10014802.BGIv1.0 annot-version=v1.0 ATGGCTTTGAGATCAATGTCTTCGGCTCTCACCGCGGGTGCCAGCAGCTTACGGAGGCTGTTGTCCACCACGTCTTCCTCTTCATCCATCTTCTCACCTT CCTCTACGCCCGCCCCTTCAGCTCGTGAGCAAGCTGATCCCAACGTCAACCTTTTCGTCTCCGGTCTTAGCAAACGAACCACAACAGAGGCTCTTAAGGA AGCCTTTGCGCAGTTTGGTGAAGTGGTTCATGCTAAAGTTGTCACAGATAGAGTATCTGGATATTCCAAAGGCTTTGGCTTTGTTAAGTATGCTACCTTG GAGGATGCTGCAAAAGCAATAGAAGGCATGGATGGAAAGTTTTTGGATGGTTGGGTTATATTTGCTGAATATGCAAGACCAAGAGCACCTCCTACATTTC CCGGTAACATGGGGCCTGGCAGTGGGAGTTATGGTTCCATAAATGGGAACAACGCTAGCTACGATTCTCGTGGTAATGTGAACCCTGGTTATGGAACTGG CAATGGATATGGTGGGAACAGTCCAAATCATGGTTATGGAAATGTTGCAGGCTCTTCCTCGTATGGTCTTAACGCTGCCTTGTCACCTGGAAATGATACA GGATCTTCATATGGGAGACATAATGCTCCTCCATATGGAAATAATTCCTATACTTATGGCAACAACCCTTCAGTGGGCAGTTCAGGTTTTGGTAACCAGA ACAGTGGCTTTGCATATGGTAATGCCCCAACTCCAGCATATGGCGATAACTCAGGTTCTGCATATGGGACAAACTCAGCATTTAGTAGTTCAGATCCCGC AGCTCAACAGAACAGTGGCCCTGCAAATGTAAACATGGTGAGTCCTGGTTATGGGGCCAGCTCAGGCACTGTATATGGAACTAACTCTGGCTTTGGAGGT TTGGGTTCTGTAGATCATGGAAACAGTGGCCCTGCATATTCAAACACCCAAAGTCCTGGACGTGGTGACAACACTGGCTCTGCATTTGCAAACGGCACAA ATCCTTCATATGATAACTCGGCCGGCTTTGGGTATGGTAACAGCACAGGCTACACTAATCGTCAGTGA
AA sequence Show only first row Show all	>Lus10014802 pacid=23150218 polypeptide=Lus10014802 locus=Lus10014802.g ID=Lus10014802.BGIv1.0 annot-version=v1.0 MALRSMSSALTAGASSLRRLLSTTSSSSSIFSPSSTPAPSAREQADPNVNLFVSGLSKRTTTEALKEAFAQFGEVVHAKVVTDRVSGYSKGFGFVKYATL EDAAKAIEGMDGKFLDGWVIFAEYARPRAPPTFPGNMGPGSGSYGSINGNNASYDSRGNVNPGYGTGNGYGGNSPNHGYGNVAGSSSYGLNAALSPGNDT GSSYGRHNAPPYGNNSYTYGNNPSVGSSGFGNQNSGFAYGNAPTPAYGDNSGSAYGTNSAFSSSDPAAQQNSGPANVNMVSPGYGASSGTVYGTNSGFGG LGSVDHGNSGPAYSNTQSPGRGDNTGSAFANGTNPSYDNSAGFGYGNSTGYTNRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	0	1
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	2.2	0.7938
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	2.6	0.8414
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	2.8	0.7988
AT4G39690			unknown protein		Lus10016813 [exp]	5.3	0.7877
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	10.1	0.7926
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10007953 [exp]	11.7	0.8022
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	12.6	0.7187
AT1G18850			unknown protein		Lus10024247 [exp]	12.6	0.7385
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	19.3	0.7291
AT3G02080			Ribosomal protein S19e family ...		Lus10000095 [exp]	22.4	0.7721

Compare expression of checked genes

Lus10014802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.