Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54540 123 / 9e-33 Uncharacterised conserved protein (UCP012943) (.1) AT4G25170 49 / 2e-06 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT5G61490 45 / 3e-05 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003594 [exp] 502 / 0 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1) Lus10009018 [exp] 54 / 1e-07 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10009654 [exp] 50 / 9e-07 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130000 [exp] 206 / 2e-64 AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G410100 [exp] 204 / 1e-63 AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1) Potri.003G107400 [exp] 56 / 1e-08 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.001G126300 [exp] 47 / 8e-06 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.014G057200 [exp] 42 / 0.0003 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014803 pacid=23150195 polypeptide=Lus10014803 locus=Lus10014803.g ID=Lus10014803.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGAGCAGCCATGAGAACGGTGGCCAAGGTCGCCGGGATCGGTGTTGTCAACAGTGGATTCCGCGGTGCCGCCTCCGGATTGCCTTCTGCTG AACACTCTGTGCGCAACGCTTCACGTCCCGTGTCAGCCATGATCTCTTCACCGCCATCGGCGTCCTCTGGTGGTACGGGTGCGGTTCAGCGCCCTGTATG GGAGATCGATCAGTGGGAGTTTGCTGGCGGTGAGGAAGAGGAGTTGATGCTGTTGGAATCCTCTGAACCGAAGCCCAGGCTTGTATTTGGCCCTCCCCCG ACTCATCAGGAGGCTAAAGAAGCTACCTCCGAGTTGAAGGACGCCCTTGAGAAAGTATCTTTCGAGAATCCTGCTCATGGAGTACCTGCTGCTTCAGTTG GATTTGCTGACCGTCATGATCTCCCTGTGCTTACAACTTCTGAACTTCCGGGGAGTAAGCGCTGCATTACATCACCAACTAGTGTGCCAGAAAATGCCGT AAGGGCGTTTAAGTTGCTCAATGAGAGCCCTGCAGCTCAGTCGGTAGTTGCTTCAATTGCCTCGGACCCAAATGTGTGGCATGCCGTTATGAACAATGAT GCACTTGCTGAATTCCTCCAGTCCCACAAGCCAGTTACAAGTGCCCTCAGTGAGGAGACAACAGAATCATATGCAGATTCGAATTCTGAGGACCCAAAAT CTCCAAAGCTGGCAGAGGCATTAGAAGATGCGTGGGAGTTTCAGAAGTCGAAGACTGGGCTTATGGATATACTGGAGGACATCAAAGTTAGCGTGGTGGA TATGTTCGGCACAGTATCTTCTTATCTGCAGAACATGTTCGGAAAGTCGTCAGCTGATGAATCTGAAGCCACAGGTGAGAGTAGCGGGAAATCATCAGCA TTCCTGGAGAATTCGATGGGAGCATCTTTCATGGCATTAGCTGTGATGGCCATCATGATGGTGGTGCTGAAACGCTATTAG
AA sequence Show only first row Show all	>Lus10014803 pacid=23150195 polypeptide=Lus10014803 locus=Lus10014803.g ID=Lus10014803.BGIv1.0 annot-version=v1.0 MGGGAAMRTVAKVAGIGVVNSGFRGAASGLPSAEHSVRNASRPVSAMISSPPSASSGGTGAVQRPVWEIDQWEFAGGEEEELMLLESSEPKPRLVFGPPP THQEAKEATSELKDALEKVSFENPAHGVPAASVGFADRHDLPVLTTSELPGSKRCITSPTSVPENAVRAFKLLNESPAAQSVVASIASDPNVWHAVMNND ALAEFLQSHKPVTSALSEETTESYADSNSEDPKSPKLAEALEDAWEFQKSKTGLMDILEDIKVSVVDMFGTVSSYLQNMFGKSSADESEATGESSGKSSA FLENSMGASFMALAVMAIMMVVLKRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	2.0	0.9164
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	3.2	0.8900
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	3.9	0.8914
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	4.5	0.8915
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	4.6	0.8780
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	6.9	0.8750
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	7.5	0.8902
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	8.1	0.8804
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	8.8	0.8722
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	11.2	0.8578

Compare expression of checked genes

Lus10014803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.