Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 163 / 2e-46 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 80 / 4e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 77 / 3e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 76 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT2G22040 57 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 57 / 4e-09 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 56 / 9e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 56 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G28450 55 / 2e-08 nucleotide binding;protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030869 [exp] 165 / 7e-47 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 160 / 3e-45 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 77 / 5e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 77 / 7e-16 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 76 / 2e-15 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 74 / 8e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 73 / 1e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 73 / 2e-14 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 68 / 6e-13 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410500 [exp] 448 / 1e-158 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G064600 [exp] 160 / 2e-45 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 158 / 2e-44 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 78 / 2e-16 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 72 / 2e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 71 / 4e-14 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 67 / 2e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 64 / 1e-11 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 63 / 4e-11 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.011G156900 [exp] 61 / 2e-10 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014805 pacid=23150200 polypeptide=Lus10014805 locus=Lus10014805.g ID=Lus10014805.BGIv1.0 annot-version=v1.0 ATGGATCACACGCTACGCATATGGAATGTCTGGAACGAAAGTCAGAAAATAGCTCGCATATTTAGGTTCCATACTGCAGCAGTAAAAGATGCCAAATGGT CTCCGCATGGATTCACAGTACTTTCATGTGGCTATGACTGTTCATCCAGGTTGATTGATGTTGAGAAGGGTTTACAGACTCAGATTTTCAAGGAAGATCA GGCTGTTGCGGTTGTGAAGTTCCATCCACGAAATTCAAGCCTCTTTCTTTCTGGAGGGTCAACTGGAAAAATAAGACTATGGGATATTAGGACAGGGAAT GTAGTGCATGAATATAAGCGAGGTCTGGGTCCAATTCTTGATGTTGAATTTACAAACAATGGAAACCAGTTTATCTCATCTAGTGATGTCTCTGGAGGCA ATGTCACCGAAAATGCCATTGTTGTTTGGGATGTTTCGCGTGAGATTCCATTGTCAAACCAGGTTTATGTTGAAGCCTTTACATGCCCCTGCATCAGGTG CCATCCGAACGATCCGTCATTCATAGCCCAATCGAATGGAGACTATGTTGCTCTCTTCTCTTTAAGGCCTCCATTCAAGTTAGATAAGTATAAGAGGTAT GCCAAGCATGGGGTGTCTGGATTTCCAGTCAAGTGTAATTTCAGTTTGGACGGGGAGATGATTGTCTCAGGATCGTCAGACGGTTCAATATATTTCTACA GTTATAAGTCATCGGAGCTTGTAAGGAAAATAAAAGCATATGATCAACCCTGTACAGATGTTGTCTTTCATCCAGTCATATCAAACGTGATTGCTTCATG CAGTTGGGATGGATGCATCTCAATCTTCAAGTGA
AA sequence Show only first row Show all	>Lus10014805 pacid=23150200 polypeptide=Lus10014805 locus=Lus10014805.g ID=Lus10014805.BGIv1.0 annot-version=v1.0 MDHTLRIWNVWNESQKIARIFRFHTAAVKDAKWSPHGFTVLSCGYDCSSRLIDVEKGLQTQIFKEDQAVAVVKFHPRNSSLFLSGGSTGKIRLWDIRTGN VVHEYKRGLGPILDVEFTNNGNQFISSSDVSGGNVTENAIVVWDVSREIPLSNQVYVEAFTCPCIRCHPNDPSFIAQSNGDYVALFSLRPPFKLDKYKRY AKHGVSGFPVKCNFSLDGEMIVSGSSDGSIYFYSYKSSELVRKIKAYDQPCTDVVFHPVISNVIASCSWDGCISIFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	0	1
					Lus10040816 [exp]	2.0	0.8681
AT3G51500			unknown protein		Lus10017918 [exp]	2.4	0.8701
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	5.2	0.8481
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	7.4	0.8747
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	10.5	0.8481
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	11.0	0.8482
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	12.1	0.8695
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	14.9	0.7912
AT4G13030			P-loop containing nucleoside t...		Lus10038204 [exp]	16.0	0.8369
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	16.7	0.8640

Compare expression of checked genes

Lus10014805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.