Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20640 142 / 3e-37 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 133 / 1e-34 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G19500 83 / 1e-17 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 84 / 2e-17 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G05710 71 / 2e-14 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 75 / 3e-14 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 72 / 2e-13 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G49830 70 / 2e-13 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 66 / 2e-11 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 62 / 2e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038550 [exp] 493 / 3e-172 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 131 / 3e-34 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 129 / 2e-33 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 82 / 4e-17 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034940 [exp] 81 / 1e-16 AT4G29100 171 / 4e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 81 / 2e-16 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025599 [exp] 77 / 2e-16 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 76 / 3e-16 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10041649 [exp] 68 / 2e-12 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129500 [exp] 196 / 2e-57 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 191 / 2e-55 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 156 / 3e-42 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 151 / 1e-40 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G051600 [exp] 87 / 9e-19 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 84 / 1e-17 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G142700 [exp] 84 / 3e-17 AT1G31050 176 / 9e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 82 / 3e-17 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G098900 [exp] 83 / 9e-17 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 76 / 2e-15 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014807 pacid=23150152 polypeptide=Lus10014807 locus=Lus10014807.g ID=Lus10014807.BGIv1.0 annot-version=v1.0 ATGGCAGATGAGTTCAACACTAGTAGCATCAACTGGTGGGATTCTACTTCAAGAACCACCGACGGAGGAGCAGCAGCAGGAACAGCCTCCTCTTCCTCAG CAGGAGGAGGAGGATGCTTTAGTTGGGCAGTAACACCTGACATGTCGGATGCTGTCAAGTCAGGTGGCGGTGGCGGTGGCGGAGGTGGTAGGTCATCTTT GGATTCTGTCTCCGTATCAACGACAGCTGACAATTCATCAGCCGCCGATCACATCCATATGATGGGGTTAGGCCTTTCTTCCCATGCCATGGACTGGAAC CAAGCTTTACTCCGGGGGGAGAAGGGTACAGATCATCATCACCACCACCAACACCAGAGCAGCTTCCGGTCAATGTTACAAATTGAGAATCTAAATTCAA CCCCACCCAGTTATAACGAACCGGGCGGCGGCGGCGGAGCAGGAGGAGGGTTGTGGAGAGAAAGGTCCACGTCATCAGTTTACAGCTCCGAGAACTCCAA CTCCATAAATGAGTTCAAGCAAATCGCTAGAGGATTCTCGTTAGACCAACCAGCTGCTGTACACGATTTCTGCCACCTCAACCCACCTGACACGTCCGGC GCCACAGGTTTCCAGTTGGGTTCTGGCGGCGGTGGTATGTTTCAGGGAGGAGGGGGAGAATTGTTGGGATCCGAACCCAACCACGTCCTCAACCACTACG CGCCGTCATACGGTGGAGGAGGAAGTATTAGTACTAGTACGGGCAACGACTTGTCGTCCGGGAATTGGTCTAGTAGTAATAATAAAGTCCCTCAGTTTCT GAGAAGTAATTCGCCGCCGCCAAAACACAGCCAGCTACACTTTTCAAATAATGCTCCCTTCTGGAATGCGTCGGGTGCGATGACTACTGATGTCCGGCCA CCGGGAGGCGGCTCCTTCCCGCAGTCATCACCCCAACAGCATCACCACTTTCCAGCTGCAGCCTCAACTTTTGATGATAAACCACCAAAGATGCAGAATA TTGGGGAGGAAAGGAATTCAAGCGCATTGGTGGTGGTAAAGAAAAGTGAAGGAGGAGGAACCAATAAAAGAAGTAGGAATGAAACTGCAGCATCTACTTT ACCAGCCTTTAAGACTGATACAGCTTCAGTGCTATCTGAAGCAATTGAATACATCAAATTCCTACATGACCAAATCAGTGTATTGAGCACCCCATACATG AAAAGTGGAGCTCCCATACACCATCAACAACAGAGTTGTGATCATCATCATCAGAAATTAAAGGACACAGCAGAAGCACAGAAGGAACTCCGTAGCAGAG GGCTGTGTCTGGTTCCAGTTTCGAGCACTTTTCCAGTCACTCACGAGACTACCGTCGATTTTTGGACCCCGACATTCGGAGGGACATTCAGATAA
AA sequence Show only first row Show all	>Lus10014807 pacid=23150152 polypeptide=Lus10014807 locus=Lus10014807.g ID=Lus10014807.BGIv1.0 annot-version=v1.0 MADEFNTSSINWWDSTSRTTDGGAAAGTASSSSAGGGGCFSWAVTPDMSDAVKSGGGGGGGGGRSSLDSVSVSTTADNSSAADHIHMMGLGLSSHAMDWN QALLRGEKGTDHHHHHQHQSSFRSMLQIENLNSTPPSYNEPGGGGGAGGGLWRERSTSSVYSSENSNSINEFKQIARGFSLDQPAAVHDFCHLNPPDTSG ATGFQLGSGGGGMFQGGGGELLGSEPNHVLNHYAPSYGGGGSISTSTGNDLSSGNWSSSNNKVPQFLRSNSPPPKHSQLHFSNNAPFWNASGAMTTDVRP PGGGSFPQSSPQQHHHFPAAASTFDDKPPKMQNIGEERNSSALVVVKKSEGGGTNKRSRNETAASTLPAFKTDTASVLSEAIEYIKFLHDQISVLSTPYM KSGAPIHHQQQSCDHHHQKLKDTAEAQKELRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	0	1
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	1.4	0.9424
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	5.3	0.9448
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	9.9	0.9212
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	10.1	0.9355
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	11.3	0.9258
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	11.8	0.9256
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	13.3	0.9174
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	13.6	0.8942
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	14.7	0.9254
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	16.4	0.8985

Compare expression of checked genes

Lus10014807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.