Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 569 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 528 / 7e-178 ARK2 receptor kinase 2 (.1) AT1G65790 515 / 1e-172 ARK1 receptor kinase 1 (.1) AT4G21390 507 / 1e-169 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 506 / 1e-168 S-locus lectin protein kinase family protein (.1) AT1G11410 498 / 6e-166 S-locus lectin protein kinase family protein (.1) AT4G27300 486 / 1e-161 S-locus lectin protein kinase family protein (.1) AT1G11330 483 / 2e-160 S-locus lectin protein kinase family protein (.1.2) AT1G61500 481 / 5e-160 S-locus lectin protein kinase family protein (.1) AT1G61390 475 / 3e-157 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 887 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038556 [exp] 637 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 627 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 622 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 619 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 610 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 605 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 605 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 604 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412300 [exp] 752 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128900 [exp] 735 / 0 AT4G27290 834 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 733 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 732 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G413300 [exp] 729 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 726 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 725 / 0 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 723 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 721 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413400 [exp] 718 / 0 AT4G27290 823 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014808 pacid=23150229 polypeptide=Lus10014808 locus=Lus10014808.g ID=Lus10014808.BGIv1.0 annot-version=v1.0 ATGGCCATCAACAACAAATTCACAGCTCCCCTTCAATTTCTCTTCCTCTGTTTTCTCCTCATATCCTCATATTCCACCGATACAATAACAACAGATAAAT GGTTCCACGATGGCGACACCGTCATTTCCGCTGGCGGAACCTACCAGATGGGATTCTTCAGCCCCGGCAGCTCCAAGAACAGATACTTGGGAATTTGGTA CAGAGACATCCCAGACTTTACTATTGTTTGGGTAGCTAATCGGGAGAAACCCATTACCCCTCCAAACGACGGCGTCCTCCAGCTTAACCCCGACGGAATT CTGGCCATCCTCGATGGCATCAACGGCACCGGAATTTGGTCAACAGCTGGCGCTTCCGCAGCAGTCGGCGGGACTGATCCAGTGGCTCAGCTTCTGGATT CAGGAAACCTGGTGGTGAAGAAGCAGCTGGGAGACGACGTGGATAATTCAATCTGGCAAAGCTTTGACTACATGGGAGACGCATTCCTCCCTGGAATGAA GCTAGGAAGGAACCTGATCACAGGTTTGAACCGGAAGATGACATCCTGGATTTCTCCAGACGATCCTTCTCCTGGAAATTTCAGTTACGGTGTGGAAATC GGCGGCTACCCTGAACTAGTTCAGAGGGACAATACAACTGAGCGGTTCAGGACCGGTCCGTGGACCGGTGTGAGCTTCAGCGGGACGCCTCATTTAAAAC CAAATCTTCTTTACACTTACGAGTTTGTGTTTAACCAACAGGAAGCTTACTACATCTACTATCTCCGAAACACCTCGGTACTCTCGAGGATGGCCATAAC TCCAGCCGGGTTGATCCAGAGGTACACTTGGCTGGGAGGTAAACAAGGATGGATGATTTATCTCACTGCCCAGAACGACAATTGCGATAGGTACGGTCTC TGCGGTGCTTATGGCAGCTGTGATATCGAGAGTTCTCCGAGTTGCAGCTGCCTTCAAGGGTTTGTGCCGAGAGTACCAAGAGAGTGGAATATGGTGGATT GGACCAACGGTTGTGTTAGGAGGACGGAGTTGAATTGTTCTGGAGATGGGTTTCTGAAACTCACGGGAGTGAAGTTGCCGGAGACACGGAACAAGTCGTG GTTTAATGTAAGCATGAGTTTGGATGAGTGCAGGGATGCTTGTATCAGAAATTGTTCGTGTACTGCTTATGCCAATTTGGACGTCAGGAATGGGGGAACT GGTTGCCTCATATGGTATGCTGAACTCGTCGATATCAGACAGTTGTACGAAAATGGCGAAAGCCTTTACATGAGGATGGCTGCTTCTGAATTAGATGAGA GTGGCAGTGGTGCTGGTGAGAAGAAGGGGAAGAAACTAGTATGGATGATACTGGGTGGAGTCTTAGCAGCTGCAGGGTTGTTATTCACACTACTTGGGTT TATTATTTGGGTTAAGAGGAAAAAGCGGCTTCCTACAGGTGCAGGTACAGATTGTTTGCATTGTCCAGGTTCAGATTGTTTGCATTGTCTTAGTTCAACT CAGATGAACAACGACAAAGAAGATCTGGAACTGCCATTGTTTGATTTGAGTACCGTGGCCTTTGCAACCAATAACTTCTCTCAGAATAATGTCCTTGGAC AAGGCGGATTTGGAACTGTTTATAAGGGGATTCTGAGAGATGGAGTAGAGATTGCAGTGAAGAAGCTCTCAAGTGATTCTCAACAAGGAGCAGATGAATT CAAGAATGAAGCAATCAACATTGCCAAACTTCAACACCGCAACTTGGTGAGACTTCTCGGATGTTGTGTTCAACGTGGTGAAAGAATGCTGCTTTATGAG TTCATGCCCAACAGAAGCTTGGACGTCTTTATTTTCGATAAAACACATAGCCATCTACTCGATTGGTCAAAGCGATATAACATTATCATGGGTATTGCTC GAGGTCTTCTTTATCTTCATCAAGATTCAAGGTTGAGAATAATCCATCGTGATCTCAAAGCTAGCAATATTTTGTTAGATACTGATATGAACCCCAAGAT TTCGGATTTTGGGTTGGCTAGAACTTTTGTAGGAAATGCATTCCAAGGAAATACAAGGAATGTCGTGGGAACTTAG
AA sequence Show only first row Show all	>Lus10014808 pacid=23150229 polypeptide=Lus10014808 locus=Lus10014808.g ID=Lus10014808.BGIv1.0 annot-version=v1.0 MAINNKFTAPLQFLFLCFLLISSYSTDTITTDKWFHDGDTVISAGGTYQMGFFSPGSSKNRYLGIWYRDIPDFTIVWVANREKPITPPNDGVLQLNPDGI LAILDGINGTGIWSTAGASAAVGGTDPVAQLLDSGNLVVKKQLGDDVDNSIWQSFDYMGDAFLPGMKLGRNLITGLNRKMTSWISPDDPSPGNFSYGVEI GGYPELVQRDNTTERFRTGPWTGVSFSGTPHLKPNLLYTYEFVFNQQEAYYIYYLRNTSVLSRMAITPAGLIQRYTWLGGKQGWMIYLTAQNDNCDRYGL CGAYGSCDIESSPSCSCLQGFVPRVPREWNMVDWTNGCVRRTELNCSGDGFLKLTGVKLPETRNKSWFNVSMSLDECRDACIRNCSCTAYANLDVRNGGT GCLIWYAELVDIRQLYENGESLYMRMAASELDESGSGAGEKKGKKLVWMILGGVLAAAGLLFTLLGFIIWVKRKKRLPTGAGTDCLHCPGSDCLHCLSST QMNNDKEDLELPLFDLSTVAFATNNFSQNNVLGQGGFGTVYKGILRDGVEIAVKKLSSDSQQGADEFKNEAINIAKLQHRNLVRLLGCCVQRGERMLLYE FMPNRSLDVFIFDKTHSHLLDWSKRYNIIMGIARGLLYLHQDSRLRIIHRDLKASNILLDTDMNPKISDFGLARTFVGNAFQGNTRNVVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10014809 [exp]	2.8	0.9247
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	4.9	0.8889
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	6.9	0.8969
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	15.7	0.8822
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	16.0	0.8662
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	18.5	0.8799
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022625 [exp]	20.3	0.8543
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	23.1	0.8693
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	28.7	0.8605
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	29.9	0.8934

Compare expression of checked genes

Lus10014808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.