Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 647 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 540 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 503 / 2e-167 ARK1 receptor kinase 1 (.1) AT1G65800 502 / 6e-167 ARK2 receptor kinase 2 (.1) AT4G27300 500 / 1e-166 S-locus lectin protein kinase family protein (.1) AT1G11410 494 / 5e-164 S-locus lectin protein kinase family protein (.1) AT1G11330 488 / 7e-162 S-locus lectin protein kinase family protein (.1.2) AT4G21390 464 / 3e-152 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 461 / 9e-151 S-locus lectin protein kinase family protein (.1) AT1G61420 450 / 2e-147 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 1199 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 648 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 615 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 606 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 597 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10033365 [exp] 592 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 587 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 582 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 580 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125601 [exp] 910 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413700 [exp] 866 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 740 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 708 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 701 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 696 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 687 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 686 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 685 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 683 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014810 pacid=23150213 polypeptide=Lus10014810 locus=Lus10014810.g ID=Lus10014810.BGIv1.0 annot-version=v1.0 ATGAAACTTTCCAAGCTCACCACTTTCTTCCTCCTCTTCATCCTCTTCTCCACACCTTCCACTGCCGCGGCGGACACAATCACCGTCAACCAATCCATCG CCGACGCCCAGAGCCAAACAATCATCTCCAGCGGCGGAAGCTTCGAACTTGGATTCTTCACCCCAAGCACTTCCTCCTCCTCTTCTTCTCCGTCAACTCT CCGCTACTTGGGAATCTGGTACAACTTCTCAAAGCAATCAGTCGTCTGGGTTGCGAATCGCGATTCCCCACTCAGTGATTCCTCTGGCGTCCTCCGGCTC GCCTCCAGCGGGACTCTCCTCCTCCTGAATTCCTCAAACGCCGTCGTTTGGTCCACCAACACAACAATAACTAGAAAGCCCCTTCAAAATCCGGTCGCAC AACTTCTCGATTCCGGTAACCTCATCGTCATAGAGTCCATAAACGAGAACAACAACAACAACTACCTCTGGCAGAGCTTCGATTACTTGAGCGACACGAT TCTTCCCGGTCTGGAATTCGGCCGGAACCTTGAAACTGGCCGAGACAGTTACCTAACCTCCTGGAAATCGGCGGACGACCCATCCGTAGGGGACTGTACG ACCCGACTGGACCCAAACGGGTACCCGCAAATCTTCATCCGGAAAGGGGAAAGCATCGTGTTCCGGTCCGGACCATGGAACGGTGTCCGGTTCAGCGGGA TGCCCAATTTGAGGTCGAACCCAATCTACACCTACGAATTCATCTACCACGACGAGGGAATCTATTACCGGCCGTATGGTAGCTGCAACATAAACAATTC ACCGCTGTGCGGGTGCCTGATCGGGTTCGAACCCAAGTCGGAGCAGGACTGGGAATCCGGGGACTGGTCGGGTGGGTGTGTGAGGAGGAACCATTCGGTG TGTGGGAGTGGTGAAGGGTTTCAGAAGGTAGCGGGTGTGAAGCTCCCCGATACCAGTAAGTCATGGTTCAACAGAAGTATGGATTTGGGTGAATGCGAGA GGGCTTGCTTAAGTAATTGTTCGTGCACGGCTTACTCCACACTCAATATTACGGATGGCAGTGGGTGCTTGATTTGGTTTGGCGATCTCGTCGATATCAG GGAGTATACCGAGTATGGCCAGGATTTCTTCATCCGCCTCGCTGCTTCTGATCTCTTGTCAGGTGGGGGCTCCAAGAGAAAGACCAGATTATGGATCATA ACTATCTGTGTACTTGCGGCAGGAATTGCTGCTCTTGGCGTATTCTTCATCTTTTACTTGAGAAAGAAAAGGCTTGAAGCCACAGGTACACTTCAAGGCC GCTCATCACAAGAAAGAGACTACACTGGAGAGGAGACCGGAGAACACGAACTAGAACTGCCGTTGTTTGATTTCTCAACCATCACCAATGCGACGGACTT TTTCTCTTCAACCAAAAAGCTTGGTGAAGGCGGGTTTGGACCCGTTTACAAGGGTGTGCTGAAAGATGGTCAAGAGATAGCTGTGAAGCGGCTGTCCAAG GATTCAACGCAAGGGGTTGATGAGTTCAAGAATGAAGTGATGTGCATTGCAAAACTCCAACACAGAAACCTTGTGAAGCTCCTAGGCTGTTGCATTGAGA AAGATGAGAAAGTATTGGTCTATGAGTACATGCCCAACAAAGGCCTGGATGCATTCATCTTTGATCAAAAGCAGAGGATACTACTGGATTGGCCAATGAG GTTCCACATTATAAACGGGATCGCTCGGGGATTGCTTGGATATATGTCTCCAGAATACGCCATTGATGGGTTGTTCTCCATCAAGTCAGACGTTTTCAGC TTTGGAGTACTGGTTCTAGAGATAGTAAGTGGGAAGAGAAATAGAGGTTTTCATCATCCGGATCATAAACACAACCTTCTTGGCCATGCATGGAGACGGT ATAATGAAGGAAAACCATCAGAAGTTCTGGATGAAACTTTGAGAGATACGTGTGTGTTATCAGACGTCGTAAGGTGCATCCATGTTGCCTTATTGTGTGT TCAGCAGGCTCCAGAAGACAGGCCTAATATGTCAAATGCCGTATTGATGTTGAGCAGCGACATTCTGCTCCCTGAACCGAAAGAGCCTGGATTCTTCACA GAAAGGAAAGTGTTCGAGCAAGAATCTTCATCCAGCAATGTTGATACCTGTTCTGCAAATGAAATCACAATCACATTATTGACTGCTCGATAG
AA sequence Show only first row Show all	>Lus10014810 pacid=23150213 polypeptide=Lus10014810 locus=Lus10014810.g ID=Lus10014810.BGIv1.0 annot-version=v1.0 MKLSKLTTFFLLFILFSTPSTAAADTITVNQSIADAQSQTIISSGGSFELGFFTPSTSSSSSSPSTLRYLGIWYNFSKQSVVWVANRDSPLSDSSGVLRL ASSGTLLLLNSSNAVVWSTNTTITRKPLQNPVAQLLDSGNLIVIESINENNNNNYLWQSFDYLSDTILPGLEFGRNLETGRDSYLTSWKSADDPSVGDCT TRLDPNGYPQIFIRKGESIVFRSGPWNGVRFSGMPNLRSNPIYTYEFIYHDEGIYYRPYGSCNINNSPLCGCLIGFEPKSEQDWESGDWSGGCVRRNHSV CGSGEGFQKVAGVKLPDTSKSWFNRSMDLGECERACLSNCSCTAYSTLNITDGSGCLIWFGDLVDIREYTEYGQDFFIRLAASDLLSGGGSKRKTRLWII TICVLAAGIAALGVFFIFYLRKKRLEATGTLQGRSSQERDYTGEETGEHELELPLFDFSTITNATDFFSSTKKLGEGGFGPVYKGVLKDGQEIAVKRLSK DSTQGVDEFKNEVMCIAKLQHRNLVKLLGCCIEKDEKVLVYEYMPNKGLDAFIFDQKQRILLDWPMRFHIINGIARGLLGYMSPEYAIDGLFSIKSDVFS FGVLVLEIVSGKRNRGFHHPDHKHNLLGHAWRRYNEGKPSEVLDETLRDTCVLSDVVRCIHVALLCVQQAPEDRPNMSNAVLMLSSDILLPEPKEPGFFT ERKVFEQESSSSNVDTCSANEITITLLTAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	1.0	0.9604
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	2.0	0.9557
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	2.0	0.9460
AT2G32190			unknown protein		Lus10039015 [exp]	6.7	0.9383
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	7.1	0.9280
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	7.9	0.9465
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	8.6	0.9057
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	8.7	0.9430
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	10.4	0.9216
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	11.8	0.9389

Compare expression of checked genes

Lus10014810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.