Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 794 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 662 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 648 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 640 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 626 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 613 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 606 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 588 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 584 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 569 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038553 [exp] 1428 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 826 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 765 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 723 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 721 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 717 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 712 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 706 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 702 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413800 [exp] 1052 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 883 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413700 [exp] 833 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 830 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 822 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 820 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G128700 [exp] 810 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 808 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 806 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 806 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014811 pacid=23150179 polypeptide=Lus10014811 locus=Lus10014811.g ID=Lus10014811.BGIv1.0 annot-version=v1.0 ATGAGCTGTGCAAGGATGGACGGGCAATCATCCACAGCGTTTGGTGTTGTCGCCATCCTGTTGTCTCTTCTTCACTTCCCCTCATCCCCAGTCGCTGCAG TGGATTCCATCAATGCAACTGAATCGTTACAAGTTGGGTCCACATTAACTTCATCAGGCGGAAGCTTTGAGCTTGGTTTCTTCACCCCACCAAATACCCA GAACCGCTACTTGGGAATATGGTACAAGAAAATGATCTCAACCTTCACCGTCGTCTGGGTCGCCAACAGAGATTCCCCTTTGAACAATTCTTCCTCCGGA GGCATCCTCACATTCATCGACGGCAACAATCTCGCCCTTATCGATAACGGTAATGGCAGCAGAAATAGTAGCAGAAGTAGTCTCTGGTCAACCAATTCGT CAGGATCAGCATCGTCAATGATCAGCCCAATTGCACAGCTTCTTGAAACCGGAAACCTCATCATACGAGATGGAAGCCGCGATCCTGAAAGGATCCTGTG GCAGAGTTTTGATTTCCCTGGCGACACATTCTTGCCAGGGATGAAATACGGGATAGACTTGAGGACAGGGCTCAATCGAGCCCTAACCTCCTGGAGGACT CCCACTGATCCAGGAGTTGGCAGCTATGCCAACACGATAGATCCGAGTGGGGTTCCGCAGTTCTTCTTGACCCGCGGGTCATTTGTAGATTTCAGGTCAG GTTCGTGGAACGGGAAGCAGTTTGGTGGGATGATCAATCTGAAGCCTAATCCTATTTATAATTACGAGTTTGTTTCCAACGCGGAAGAGATATACTACCG GTACGAGCTGATAAACAGTTCGGTGGTGTCAAGGATGGTATTGACCTCTGAAGGAAATTTGCAACGATTCATTTGGGTTGAAAGGACCCAAGAGTGGAAC CTCTACCTTACAGCACACACCGATAACTGCGACAGGTACGAACTGTGTGGTCCGAATGGCATCTGTAACATCAACAATTCCCCTGCCTGTGCATGTCTCA CCAGGTTTGTCCCCAAATTTGCCGACGAATGGAACACTGCTGATTGGTCTAACGGGTGTGGTCGAGCTTTTTCTTTTGCAAATATGGATGTTAGGAATGG AGGAAATGGCTGCATCTTGTGGTTTGGTGACCTCCTGGATATTAGACAGTACAATGACAACAATGGTCAGGACATTTACATCAGATTGGCTGCCTCTGAA ATGGAAAAATATAGAAGACCCAACGGGAAGAAACGAGTTATGATCATAGTAATCCCTGTATCAGTAGTTGGATTCATTCTGTTATCTCTTTGTGTTATCT TGAGAATCCAAAGGAGGAGTAAACAGCTTAGAATACAAGCAAGTATGGCACCAAGTCCAGAAGAAACCGAAGAAGATGACGACGACGAGGTAGATGAGGA GGAGCACATGAATGGACATAGTAATAGGGATTTAGAGCTACCGTTATTCCAATTCGCTACCATTGCTGATGCTACCAATAACTTCTCGTCGAACAACAAG CTTGGCCAAGGTGGTTACGGACCAGTTTACAAGGGAATCCTGAAAAACGGACGGACTATAGCAGTGAAGAGGTTGTCCAAGAGGTCGAGACAAGGAACCC ATGAGTTCAAGAATGAAGTTGTTTGCATTGCCAAACTACAGCACAGGAATCTTGTGAAGCTTCTAGGATGCTGCATTCAATCAGATGAAAGGATGCTGAT CTATGAATACCTGCCCAACAAAAGCTTGAACTTCTTTATTTTCGACAAAAGGCAAAGCATGTTACTGGATTGGCGTAAGCGACTCCACATCATCAACGGG GTTTCCAGAGGACTTCTTTACCTTCATCAAGATTCAAGGCTGAGAATAATCCACAGAGACATGAAAGCAAGCAATGTATTGCTTGATCATGAGATGAACC CCAAAATTTCAGACTTCGGCATGGCAAGGAGCTTTGCAGGAGATGAAAGTAGTGCAAACACTAACCGAATAGTTGGAACATATGGTTACATGTCTCCGGA GTATGCCATCGATGGTCTCTTCTCCGTGAAATCAGACGTGTTCAGCTTTGGTGTCTTGGTCCTGGAGATAATAAGTGGAAGGAAGAATAGAGGGTTCTCT CACACAGACCACAAACTAAATCTTCTTGGCCATGCATGGATGCTTCACAAAGAAGGTAGATCACATGAGCTGGCTGAAGAATGCATAAGGAACACCTGCA GCGATTTGGCAGAGGTGGAGCGAGCGGTCCACATAGGATTGATGTGTGTGCAGCAGAGTCCAGAAGATAGGCCAAACATGTCAAGCCTAGTTGTGATGTT GAGCAGTGAGATTGAACTAGCTCAACCAAAAGAGCCTGGATTCTTCACTGAAAGGGATATCCTTGAAGCAACTTCTTCAATGAGCAAGCATGAATACTCT TCTTCCAACAAGCTGTCTGAAACCCTCATAGACGCTCGATGA
AA sequence Show only first row Show all	>Lus10014811 pacid=23150179 polypeptide=Lus10014811 locus=Lus10014811.g ID=Lus10014811.BGIv1.0 annot-version=v1.0 MSCARMDGQSSTAFGVVAILLSLLHFPSSPVAAVDSINATESLQVGSTLTSSGGSFELGFFTPPNTQNRYLGIWYKKMISTFTVVWVANRDSPLNNSSSG GILTFIDGNNLALIDNGNGSRNSSRSSLWSTNSSGSASSMISPIAQLLETGNLIIRDGSRDPERILWQSFDFPGDTFLPGMKYGIDLRTGLNRALTSWRT PTDPGVGSYANTIDPSGVPQFFLTRGSFVDFRSGSWNGKQFGGMINLKPNPIYNYEFVSNAEEIYYRYELINSSVVSRMVLTSEGNLQRFIWVERTQEWN LYLTAHTDNCDRYELCGPNGICNINNSPACACLTRFVPKFADEWNTADWSNGCGRAFSFANMDVRNGGNGCILWFGDLLDIRQYNDNNGQDIYIRLAASE MEKYRRPNGKKRVMIIVIPVSVVGFILLSLCVILRIQRRSKQLRIQASMAPSPEETEEDDDDEVDEEEHMNGHSNRDLELPLFQFATIADATNNFSSNNK LGQGGYGPVYKGILKNGRTIAVKRLSKRSRQGTHEFKNEVVCIAKLQHRNLVKLLGCCIQSDERMLIYEYLPNKSLNFFIFDKRQSMLLDWRKRLHIING VSRGLLYLHQDSRLRIIHRDMKASNVLLDHEMNPKISDFGMARSFAGDESSANTNRIVGTYGYMSPEYAIDGLFSVKSDVFSFGVLVLEIISGRKNRGFS HTDHKLNLLGHAWMLHKEGRSHELAEECIRNTCSDLAEVERAVHIGLMCVQQSPEDRPNMSSLVVMLSSEIELAQPKEPGFFTERDILEATSSMSKHEYS SSNKLSETLIDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	1.0	0.9765
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	1.4	0.9686
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	2.4	0.9678
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	3.0	0.9563
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	3.2	0.9550
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	3.9	0.9596
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	4.0	0.9462
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	4.9	0.9654
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	5.5	0.9377
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	6.5	0.9590

Compare expression of checked genes

Lus10014811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.