Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 724 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 696 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 682 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 665 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 664 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 631 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 626 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 592 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 591 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 590 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038557 [exp] 768 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 768 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 758 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 755 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 753 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 733 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 728 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 724 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 723 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G414000 [exp] 887 / 0 AT4G27290 766 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 860 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 847 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 843 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 839 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 816 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 810 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 805 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 799 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 791 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014812 pacid=23150188 polypeptide=Lus10014812 locus=Lus10014812.g ID=Lus10014812.BGIv1.0 annot-version=v1.0 ATGAATCCCAACAACCAACTTTCCACCGACTTAAGCTCCCCCCGGCCGCCCCCCCCACCACCCCCAACAACGGAATGGATACTAATCTCATTGTTTCTTG CAACTTCAGGAAGGAAACCCGAATCCAGAAACATGGAGGAGGAAGTTGTAGACTTCAGAAAATGGTGGGTTACTACTGTTTACATCTGCTTCTTTTGTTT AACCCAGATTTCTGCTTCCTCGAATACGGTTCTATCCCCAGGTCATTCCCTTAGAGATGCTGACAACCAGACTTTGGTTTCAGTTGATGGGACGTTCCAA CTTGGATTTTTCAGCCCAGGCAGCTCCACGAATCGGTACTTGGGAATATGGTATCAAAATGTTCCAGGACGGACAGTGGTCTGGGTTGCTAATCGGAAAT CTTCACTTCCTGATGCTTCTGGAGCTCTCATTCTTACTCCCCACGGACTTTTGGTCCTTATGAATGGTGATAACACAACGATTTGGTCTTCCAACGTTAC TAGGAAACCAGCCGTGAGTCTATCTCTTGAGCTTCTGGATTCTGGGAATTTGGTGGTCAAGGATGATAACAGCACTGTTTCAGACAACTTTTTGTGGCAG AGCTTTGACTACCCTTGTGATACTTTGCTTGCCGGAATGAAGATTGGGAAGAATTTTGTGACTGGGAAAGACACAATTTTAACATCCTGGAAGAGTGATG ATGATCCTCAAGAAGGCCAGTTTTCGTTGCTGATCGATCCCCGTGGCTTCCCACAATTTGTTGTCAAAAACCAGGGAGTGAATCACTTCAGGTTGGGATC CTGGAATGGCTTTCAGTTCACAGGAACTCAGCTTCGGCCTAGCCCATTCTTGAAATACGAGTTTGTGCTAAATGCGGTTGAGGTTTACTACATGTTTGAG ATTAATTCTTCTTCACTGTTGTCGAGCTTGTTGATGAATCAATCAGGGTTTGTAGAGCGTTACGCGGGTTTACGTGAAGGAAGCATGTGGAGGATGGTGT TCTCGGCGCCGTTAGATGATTGTGATAATTATGCACATTGTGGACCTCACAAGACCTGCAATTTAGTGGCTGATTCCCCAACTTGTGTTTGCCTAGATGG GTTCGAGTCGAGATCTCCTGAAAACCGTAGCAGTGAATGTGTGAGAAAGGTTCCATTGGAATTGGATTGCAAGAATGACCATTTTCAGACTTACACGGGA CTTAAGTTGCCAGACACTTCTTTTTCCTTGTTTAATACAAGCACAAGCCTTAAGGATTGTAGAGAAATTTGCTCGAAAAATTGCTCATGCATGGCATATG CGGATTCTGATATAACCAAACCTGATGTTGGATGTTTGATGTGGTTTGGCGAGCTAGCAGACATGAGGAAGTACGATAATGGAGGTCAAGACCTTTTTGT ACGAATGTCTTCACCAATAATTAAGAAACCAACTTCAAATCCTCGTAGCAAGAACTTCGTAGCCATCATAGCCGGGTCAATTGCACTAACAGGACTGTTA GGAGTAGCCCTGCTCATTTGTTTGTACTGGAGATGTAAAATCCAAGGAACTAGGGAAAGTATTTTCATAACTAATGATCAAAAGAAACGAGGAGATGGCG ATATAGACTTGCAAACTTTTGATCGGGCTACAATAGTGAATGCTACAAATAATTTCTCATTGGACAACAAATTAGGACAAGGTGGATTTGGACCTGTTTA TAAGGGCACATTGACAGACGGGAAAGAAATAGCAGTAAAAACTCTGTCAAAAAGTTCTGGGCAAGGAACAACTGAGTTCAAGAATGAAGTTGTTTTGATT GCAAAACTTCAGCATCGGAATCTCGTAAAACTCCTTGGTTGCTGCATTGAAGGAGATGAAAAGATGTTGATCTATGAGTATATGTCCAACAAAAGCTTGG ACTTCTTCATTTTTGATGAAACAAAGAACCAATGGCTTGATTGGACTACAAGAATTACCATTGTCAATGGGATCGCAAAAGGTCTTTTATATCTTCATGA AGATTCAAGATTGAGGATCATTCACAGAGATCTAAAGGCCAGCAATGTGCTGTTGGATAAGGATATGAACCCAAAAATTTCAGACTTTGGAATGGCTAGA ATATTTGGAGGAGACCAAATCGAAGCAAACACAAATAAAGTAGTTGGAACATTCGGCTACATGTCTCCTGAGTATGCCATTGATGGCCTTTTCTCAATGA AATCCGATGTGTATAGTTTTGGGGTTTTGACGCTTGAAATCATTAGTGGGAAGAAGAATAGAGGCTTCAGCCACAAAGATCATAACCTTAACCTTCTTGG TCATGGATGGAAGTTGTGGGTGGAAGGCAGGCCAATTGAGCTAGCCAGCAATGTTACAGATGAACCCTCCATAATGAATGAAGTACTAAGATGCATTCAT GTGGGTCTCCTATGCGTTCAACAAAAACCAGATGACAGGCCAAGCATGTCATCTGTGGTTGTGATGTTAAGTAGTGATATTCTGCTCCCACAGCCAAAGC AGCCTGGCTTTTTCACTGAGCGGAATGCGCCTGGCACTGATTTCTCCTCGGATAAGATTACTACCTCATCGGTGAACGAAGTTACTATGACACTTCTAGA TGCGAGGTAG
AA sequence Show only first row Show all	>Lus10014812 pacid=23150188 polypeptide=Lus10014812 locus=Lus10014812.g ID=Lus10014812.BGIv1.0 annot-version=v1.0 MNPNNQLSTDLSSPRPPPPPPPTTEWILISLFLATSGRKPESRNMEEEVVDFRKWWVTTVYICFFCLTQISASSNTVLSPGHSLRDADNQTLVSVDGTFQ LGFFSPGSSTNRYLGIWYQNVPGRTVVWVANRKSSLPDASGALILTPHGLLVLMNGDNTTIWSSNVTRKPAVSLSLELLDSGNLVVKDDNSTVSDNFLWQ SFDYPCDTLLAGMKIGKNFVTGKDTILTSWKSDDDPQEGQFSLLIDPRGFPQFVVKNQGVNHFRLGSWNGFQFTGTQLRPSPFLKYEFVLNAVEVYYMFE INSSSLLSSLLMNQSGFVERYAGLREGSMWRMVFSAPLDDCDNYAHCGPHKTCNLVADSPTCVCLDGFESRSPENRSSECVRKVPLELDCKNDHFQTYTG LKLPDTSFSLFNTSTSLKDCREICSKNCSCMAYADSDITKPDVGCLMWFGELADMRKYDNGGQDLFVRMSSPIIKKPTSNPRSKNFVAIIAGSIALTGLL GVALLICLYWRCKIQGTRESIFITNDQKKRGDGDIDLQTFDRATIVNATNNFSLDNKLGQGGFGPVYKGTLTDGKEIAVKTLSKSSGQGTTEFKNEVVLI AKLQHRNLVKLLGCCIEGDEKMLIYEYMSNKSLDFFIFDETKNQWLDWTTRITIVNGIAKGLLYLHEDSRLRIIHRDLKASNVLLDKDMNPKISDFGMAR IFGGDQIEANTNKVVGTFGYMSPEYAIDGLFSMKSDVYSFGVLTLEIISGKKNRGFSHKDHNLNLLGHGWKLWVEGRPIELASNVTDEPSIMNEVLRCIH VGLLCVQQKPDDRPSMSSVVVMLSSDILLPQPKQPGFFTERNAPGTDFSSDKITTSSVNEVTMTLLDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10014812 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	4.1	0.8379
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	11.7	0.7784
AT2G36885			unknown protein		Lus10013829 [exp]	14.0	0.7626
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	14.5	0.7667
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018068 [exp]	22.2	0.7533
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	23.8	0.7304
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	24.0	0.7068
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018067 [exp]	25.6	0.7322
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	32.1	0.7217
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	32.4	0.7157

Compare expression of checked genes

Lus10014812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.