Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 787 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 723 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 719 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 704 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 690 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 664 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 654 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 634 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 628 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 603 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038556 [exp] 1508 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 892 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 822 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 822 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 812 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 795 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 793 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 775 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 765 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G414077 [exp] 949 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 917 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 885 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 885 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 880 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 866 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 859 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 855 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 854 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 854 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014813 pacid=23150182 polypeptide=Lus10014813 locus=Lus10014813.g ID=Lus10014813.BGIv1.0 annot-version=v1.0 ATGGGACAGTTGCAGGAGGACACTCTTATTCCAGGCCAATCTCTAAGCGACGGTCAGTCCGTCATTTCAGCCAGAGGCAGCTTCCAACTGGGATTCTACA GGCCGGAAAATTCCAGCAGTCGATACTTGGGGATTTGGTACGGCGTCAGAGTACCAAGGCAAACTATCGTATGGGTAGCGAATAGAGGAGCTCCCATTTC CGACACTCGTGGAGTCCTCAACTTTACCAGGGATGGTGTTCTCGTCCTGTCCGATGGCGGCCGAAACAACCTTGCAGTCTGGTCGTCTAACGTCACCAGT CCTCCGAGGAGCTCCAACTCCAACCCGGTTGCTCAGCTTCTTGAATCGGGGAATCTAGTTGTCAGAGATGCGAACGATGAAAACCCGGATAACTTCCTTT GGCAGAGCTTCGATTACTTGACCGACACGTTACTCCCAGGTATGAAACTTGGGAGGAACCTGGTCACAGGTCTGAACTGGAAAATGACGTCATGGAGGAG CGAAGAGGACCCCGCAGAAGGCCAATTCTCAGTCCTCATGGAAACGATCGGATATCCCCAGCTTGTAGTTCGGAGGGGTAATTCCACGATCCAATTCCGA GCTGGATCATGGAACGGACTCAGATTCACGGGAGTACCAGCGCTCAAACCGAGTCCAACGTTTTCCTTCGACTACCAATATAATAGCCAAGAGGTTTTCT TTAGGTTCGAGGTGCCGAACAATTCGGTGGTATCCAGGTACGGAATTTCCCCGTCCGGGTCGCTCCAGCTCCAGACGTGGATCAACAGGACGGGAGGCTG GCTAACTATAGCCACAGGGCAAGGAGATCGGTGCGACGCTTACGGTTTATGTGGCACGTACGCTAGTTGTTATATTTACACGTCACCGGCTTGTCAATGT ATGAATGGGTTCACTCCCACCAACCCGAGTGACTGGAATAGGTCGGAATGGGGTGAAGGGTGCGTCAGGAGGACCGCCTTGGCTTGTAATTCGAGCGACG GGTTCGTTACGCTTTCGGGGATTAAGTTGCCGGATACTTCCAAGACTTGGTATGATGAGACAATTGGGCTGGAGGAATGTGGAAGGTTGTGCTTAAACAA CTGTTCCTGTACCGGGTATTCTAGTTTGGATATCAGTAACGGCGACAATGGCTGCTTGATGTGGTTGGATGATTTCATCGATATTCGAGCCTTGTCGGAT GGCGGGCAGGATTTATATGTCAAGATGGCCGGTTCAGAAATAGTGGCTCGAGGGGAGCGGAGGTCTGACAATACCAGAAAGAAAGCCATTATCGTGATCA GTGTTGTGATTTCGTCTGTAGCTGTGATGACATTGGTGGTGACTGGTCTTTATGTCAGGAAAAGAAAGATGAGACTAGTTAGGCAAAAAGAAGCGGCGCA GACACTGGCAGTTCCAAGGACAAAGACACAGAAGGAGAGGAATGAAGAGATGGAGTTGCCTACATTTGATTTGATCACAATAGTGAATGCCACTAACAAC TTTGCCAATAACAACAAGCTTGGTGAAGGCGGGTTTGGACCCGTCTACATGGGGAAGCTAGGTGAAGAGCAAGAGATAGCGGTGAAGAGGCTGTCGAAGA GCTCAGGACAAGGTCTCGACGAGTTCAAGAATGAAGTCATTCTATTCTCCAAACTCCAGCACAGGAACCTTGTACGCTTGCTCGGTTGTTGCATTCATGA CGATGAGAAGATGCTCATCTACGAGTACATGCCCAACAAAAGCCTCGATTTCTTCATCTTCAACGAGACACAAAGGAAACAATTGAATTGGAGAAAACGG ACGATAATCATAGATGGGATTGCTCGTGGGCTCCTCTATCTTCACCAAGACTCGAGATTGAGGATCATCCATAGAGATCTCAAAGCCAGCAACATCTTAC TTGATAATCAGATGAGACCCAAAATCTCCGACTTTGGTCTTGCAAGGTCATTTGGAGGAGATCAAACTGAGGGCAACACAAATAAAGTGGTCGGGACATT TGGCTACATGTCTCCGGAGTACGCAGTTGATGGACTCTTCTCGATAAAGTCGGATGTATTTAGTTTCGGAGTGCTAGTACTTGAGATAGTGAGCGGCCGT CGAAACAGAGGATTCTACCACACTGACCATGACCTCAATCTCGTAGGCCATGCATGGACGCTGTGGAATGAAGGAGCAGTGCTGGAGGTGATAGATGAAG CAGTGAATAAAGAGAGCTGCAACCAGTCAGAAGCGTTGAGATGCATACATGTGGCATTGCTGTGCGTGCAGCAAAGGCCAGAGGACAGGCCAAACATGTC AGCAGTTGTGCTGATGATGGGGAGCGAGAATCCGCTACCTCAACCAAAGATGCCTGGGTTTTACCTAAGAAGGAATCCACCTGAGACTGATACTAGTTCC TCTACAAACAATCATGATTCTTGCTCCGTTAACCAAGTTTCCCTCACTGTAATGCATCCTCGTTAG
AA sequence Show only first row Show all	>Lus10014813 pacid=23150182 polypeptide=Lus10014813 locus=Lus10014813.g ID=Lus10014813.BGIv1.0 annot-version=v1.0 MGQLQEDTLIPGQSLSDGQSVISARGSFQLGFYRPENSSSRYLGIWYGVRVPRQTIVWVANRGAPISDTRGVLNFTRDGVLVLSDGGRNNLAVWSSNVTS PPRSSNSNPVAQLLESGNLVVRDANDENPDNFLWQSFDYLTDTLLPGMKLGRNLVTGLNWKMTSWRSEEDPAEGQFSVLMETIGYPQLVVRRGNSTIQFR AGSWNGLRFTGVPALKPSPTFSFDYQYNSQEVFFRFEVPNNSVVSRYGISPSGSLQLQTWINRTGGWLTIATGQGDRCDAYGLCGTYASCYIYTSPACQC MNGFTPTNPSDWNRSEWGEGCVRRTALACNSSDGFVTLSGIKLPDTSKTWYDETIGLEECGRLCLNNCSCTGYSSLDISNGDNGCLMWLDDFIDIRALSD GGQDLYVKMAGSEIVARGERRSDNTRKKAIIVISVVISSVAVMTLVVTGLYVRKRKMRLVRQKEAAQTLAVPRTKTQKERNEEMELPTFDLITIVNATNN FANNNKLGEGGFGPVYMGKLGEEQEIAVKRLSKSSGQGLDEFKNEVILFSKLQHRNLVRLLGCCIHDDEKMLIYEYMPNKSLDFFIFNETQRKQLNWRKR TIIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNQMRPKISDFGLARSFGGDQTEGNTNKVVGTFGYMSPEYAVDGLFSIKSDVFSFGVLVLEIVSGR RNRGFYHTDHDLNLVGHAWTLWNEGAVLEVIDEAVNKESCNQSEALRCIHVALLCVQQRPEDRPNMSAVVLMMGSENPLPQPKMPGFYLRRNPPETDTSS STNNHDSCSVNQVSLTVMHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	0	1
					Lus10021406 [exp]	1.7	0.9785
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	3.2	0.9535
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	3.3	0.9264
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	3.5	0.9628
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	4.2	0.9584
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	5.3	0.9573
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	5.9	0.9386
AT4G23030			MATE efflux family protein (.1...		Lus10027417 [exp]	8.1	0.9064
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	8.5	0.8624
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	8.5	0.9404

Compare expression of checked genes

Lus10014813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.