Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65280 474 / 2e-160 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G22080 64 / 4e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G61770 56 / 3e-08 Chaperone DnaJ-domain superfamily protein (.1) AT5G49060 56 / 4e-08 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT5G05750 55 / 7e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G57340 54 / 1e-07 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G59610 49 / 4e-06 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G06778 47 / 1e-05 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 48 / 2e-05 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT5G06910 47 / 3e-05 ATJ6, EMB1393 J-domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017919 [exp] 798 / 0 AT1G65280 554 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013354 [exp] 63 / 9e-11 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10004099 [exp] 63 / 9e-11 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10037502 [exp] 58 / 1e-08 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10006760 [exp] 56 / 3e-08 AT1G61770 409 / 5e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10020062 [exp] 55 / 7e-08 AT1G61770 411 / 1e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10006515 [exp] 55 / 1e-07 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10019421 [exp] 55 / 1e-07 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10016510 [exp] 54 / 1e-07 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083700 [exp] 560 / 0 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G215800 [exp] 67 / 3e-12 AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.009G016700 [exp] 67 / 3e-12 AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.010G013200 [exp] 60 / 3e-09 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.004G022600 [exp] 58 / 9e-09 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G120000 [exp] 54 / 2e-07 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G153700 [exp] 52 / 9e-07 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G005700 [exp] 49 / 6e-06 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G148900 [exp] 49 / 1e-05 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 48 / 1e-05 AT1G24120 566 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12572 [flax] [poplar] DUF3752 Protein of unknown function (DUF3752) CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10014815 pacid=23150221 polypeptide=Lus10014815 locus=Lus10014815.g ID=Lus10014815.BGIv1.0 annot-version=v1.0 ATGAGAAAGAAATCAAAGAGGAAACATAGAGACGACACGCCGACTTCCTCGTCGGGCTCCGAGGAAGGGGATACGGATTATTCTTCTGAAACTTCGTCGG AGAGACGGCGGAGGCACCGGAAACAGCGGCGGAATTGCGATGGGAACTCAAAGCGCGACAAAGAGAAAAGGAAGAGGAAAAAAGAGCGGAAGGAAAGAGA GAATGATAGGAAGAGAAGAAAATCGAAGAAGAAGAGCTATGATTCTGATTCAGAGTCAGAGTTCGATTCTTCGGGGAGGGAGGGGTCTGTAACCAGACGA CCTAAGCCGGAAGCTGTGATGAAGGAGATGTTGACGGCGTTCCCCGCCGTAGGAGGCGACTTGAAGCAGCTTCTGCAAATGATTGATGCTGGACAAGCTG TTTACATTGGTGGAATATCTGATAAGACAATTGTGTTTGCTAATTTGTCTATTCACTTTGCGCTCCGTCTGGAGAAGTCTGCATTCGTTTTGCTTCTGCA AATGATTGATGCTGGACAAGCTGTTTACATTGGTGGAATATCTGATAAGACAATTGTGTTTGCTAATTTGTCTATTCACTTTGCGCTCCGTCTGGAGAAG TCTGCATTCGTTTTGCTTCTGCAAATGATTGATGCTGGACAAGCTGTTTACATTGGTGGAATATCTGATAAGACACTGGTCAAGCATTTGAGGAAGCTTT TTGTTTCTTTGAAACTCAAGGAAAAGGATGATCAGGTTTTCTTGCTTCCTTTTAATCATCCACCCACTTTGGAGATTATAGGCTCTTTGATTGAGGATCG CGTGGAACGTAAAGGGAAGCAAGTGGATGATACTGCTACCGGAAACGACGTGCATCCAGTAGGTGTGGATGATGAGTTCGGGCAAGCATTGGATGACACG CCAATGCCATCTACTTCAACAGACGTTCCTCCTCCAAGAAAGAGAGTGATTGGGCCTGAAATGCCATCATCTGAGTTACTTGCAGCTGCTGCAAAATTGA CTGAAGCACAAGAGGAGCTTAGGACAGTGGAGTTGGAGGAAGATAATGAACTGTTTGTCGGACCTCCCCCGCCTGCAGTTGCTGCTGAAGCAGAATCTGT AAATGAGGCAGAACGTTTTGAAGAGGTTACAAGAATAATGGATGGCAGTGATGACTCTCCATATGATGTCGTTGGGGTGAATCATCGGATGTCTGCTGAT AATATAAAGAAACGATACTGGAAACTGTCTCTTCTTGTGCATCCAGACAAGTGTTCTCATCCTCAAGCTCAACAAGCTTTTGTCAAATTGAATAAAGCTT TCAAGGACTTGCAAGATGTTGATAAGCGTAAGATACTGGATGAGAAAATAAAGCAGAAGGAGGAGCAAGAAGCATTTAAGGTTGAGTTGAAAGTTATGCA GGAAGCTGCTCAATGGAGAAGATTGCAAGGTATATCTATGGAGGGTGATGATGAGCTTCTGGCAGAGCTGGAGGTTAAAGTAGCCCCAAAGAGAGATGAA TGGATGACGACATTACCACCAGAAAGAAAGGCCGGTGGTGTGACCATGCATTCGACGAAAGCATTCAGCAAGGATGTTAAAGAAGGTCGTGGTGATACTA GTGCATGGACAGATACTCCTTCAGACAGAGCTTTGAAGGCAAAAATGAATTACCTGGAAGCGTATGATGCTGCAACAGCACTTGCTTCAAACGAAGAGGA AAAGAAACAATCGAATGCGGATGCAGATCTGGTAGACAAATACAACAAAGCTAAACGTTCCAAGTCGTTGGTGCAGAAGCATCAAGAAGAGCTGGTTGAT CGTTCGTCGTCGTCGAAGAAAAAAACAAAGCAACAGAAGCAGAAAGAGAAAGAGAAAGAAGAGTGGGCGGGACAACATCCATGGAAGCCTTGGGATCGCG ATAAGGACCTTTCAGCTGGTAGAAAGAACGTAAAGCTTGATGCAGAGAACATGGGTCAAGGCTTGACTTCTCGATTCTCGTCGGCCAACTTCCAGAGGAA TTTCCTTTAG
AA sequence Show only first row Show all	>Lus10014815 pacid=23150221 polypeptide=Lus10014815 locus=Lus10014815.g ID=Lus10014815.BGIv1.0 annot-version=v1.0 MRKKSKRKHRDDTPTSSSGSEEGDTDYSSETSSERRRRHRKQRRNCDGNSKRDKEKRKRKKERKERENDRKRRKSKKKSYDSDSESEFDSSGREGSVTRR PKPEAVMKEMLTAFPAVGGDLKQLLQMIDAGQAVYIGGISDKTIVFANLSIHFALRLEKSAFVLLLQMIDAGQAVYIGGISDKTIVFANLSIHFALRLEK SAFVLLLQMIDAGQAVYIGGISDKTLVKHLRKLFVSLKLKEKDDQVFLLPFNHPPTLEIIGSLIEDRVERKGKQVDDTATGNDVHPVGVDDEFGQALDDT PMPSTSTDVPPPRKRVIGPEMPSSELLAAAAKLTEAQEELRTVELEEDNELFVGPPPPAVAAEAESVNEAERFEEVTRIMDGSDDSPYDVVGVNHRMSAD NIKKRYWKLSLLVHPDKCSHPQAQQAFVKLNKAFKDLQDVDKRKILDEKIKQKEEQEAFKVELKVMQEAAQWRRLQGISMEGDDELLAELEVKVAPKRDE WMTTLPPERKAGGVTMHSTKAFSKDVKEGRGDTSAWTDTPSDRALKAKMNYLEAYDAATALASNEEEKKQSNADADLVDKYNKAKRSKSLVQKHQEELVD RSSSSKKKTKQQKQKEKEKEEWAGQHPWKPWDRDKDLSAGRKNVKLDAENMGQGLTSRFSSANFQRNFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	0	1
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	3.5	0.8471
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	5.5	0.8287
AT1G56423			unknown protein		Lus10020695 [exp]	9.3	0.8397
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	12.5	0.8135
AT4G08580			microfibrillar-associated prot...		Lus10020321 [exp]	13.4	0.8162
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	15.5	0.8346
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	18.3	0.7904
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	21.0	0.8402
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10002788 [exp]	30.0	0.8063
AT4G20150			unknown protein		Lus10038391 [exp]	32.8	0.7986

Compare expression of checked genes

Lus10014815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.