Plant FIBer expression Database

Lus10014817 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07985 39 / 0.0008 Expressed protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017917
[exp]
221 / 7e-74 ND /
Lus10029516
[exp]
44 / 2e-05 AT1G07985 69 / 3e-15 Expressed protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G146000
[exp]
81 / 4e-19 ND /
Potri.001G456100
[exp]
70 / 4e-15 ND /
Potri.001G266500
[exp]
45 / 3e-06 AT1G07985 73 / 3e-17 Expressed protein (.1)
PFAM info
Representative CDS sequence
>Lus10014817 pacid=23150167 polypeptide=Lus10014817 locus=Lus10014817.g ID=Lus10014817.BGIv1.0 annot-version=v1.0
ATGATGGTAAGGAAAGATAATCAGGAGGTTGCAACTTTCTCTCCAATTCTCTCCAGATTGGATCGCCTTGATCGAATGCTAAAGTTTCTAGACGATAAAT
ATGTCTTGATGGGAAAGCCACCTCCATGTTCTGACATCCCAAAATCGAAAGCCGTGGATGTGGAAGATGAGTGTATCAGTTTATCCTCCGCACTAGAGCT
AGTCAAACAGAAAGGCAGTGTGGTGGAGAGACTTGAATTCCTCGAGAATCGCATCTTACAGTTGAGCCTAGCGATGCCAAAAGGCAGCAGCACATCCAGG
ACAAGCTCGTCATCGGTTTACGAAGGAGATGAAGATGGAAGTGATAGTCAAGATCTGCTTGTAAAGCGATCACACAAGGCTCCACATCTCGTGGAAACAG
AGGTGAATCAACTGGGTTGCCCCTTCTTTTTCTGCAAAATGTATGACTTTTTATATATGGGATATGATGGGAAAGGTTGTCACGTCCACTTTGGTTGGTT
TTGCTTCTTCTTCTTCTTCTTATGCAGAAATGCACAAGGCGTAGTAGTAGAAAAAGAGGCAGGAAATGGGGTGCAGGATGGAGGTGGTTGCATATGGGAT
GCACCACTGAAAATCATTAACTCGTCTTACCAATAA
AA sequence
>Lus10014817 pacid=23150167 polypeptide=Lus10014817 locus=Lus10014817.g ID=Lus10014817.BGIv1.0 annot-version=v1.0
MMVRKDNQEVATFSPILSRLDRLDRMLKFLDDKYVLMGKPPPCSDIPKSKAVDVEDECISLSSALELVKQKGSVVERLEFLENRILQLSLAMPKGSSTSR
TSSSSVYEGDEDGSDSQDLLVKRSHKAPHLVETEVNQLGCPFFFCKMYDFLYMGYDGKGCHVHFGWFCFFFFFLCRNAQGVVVEKEAGNGVQDGGGCIWD
APLKIINSSYQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014817
[exp]
0 1
AT2G30140 UDP-Glycosyltransferase superf... Lus10042263
[exp]
2.8 0.8880
AT5G52410 unknown protein Lus10026416
[exp]
3.5 0.8822
AT3G20660 4-Oct, ATOCT4 organic cation/carnitine trans... Lus10014801
[exp]
4.5 0.9127
AT5G54850 unknown protein Lus10011150
[exp]
10.0 0.9071
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Lus10033533
[exp]
10.7 0.9019
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Lus10007305
[exp]
24.1 0.8998
AT5G25220 HD KNAT3 KNOTTED1-like homeobox gene 3 ... Lus10003183
[exp]
27.4 0.8851
AT3G12160 AtRABA4d ARABIDOPSIS THALIANA RAB GTPAS... Lus10023829
[exp]
27.6 0.8758
AT3G06810 IBR3 IBA-RESPONSE 3, acyl-CoA dehyd... Lus10020908
[exp]
28.2 0.8989
AT2G38450 unknown protein Lus10001262
[exp]
29.9 0.8820

Lus10014817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.