Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09580 352 / 3e-123 SNARE associated Golgi protein family (.1) AT1G71940 347 / 1e-121 SNARE associated Golgi protein family (.1.2) AT4G17790 273 / 2e-92 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017913 [exp] 444 / 9e-160 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10000905 [exp] 277 / 4e-94 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10004564 [exp] 277 / 4e-94 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083500 [exp] 370 / 1e-130 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.013G113000 [exp] 368 / 1e-129 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.003G094000 [exp] 288 / 1e-98 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.001G140200 [exp] 283 / 1e-96 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.001G070800 [exp] 40 / 0.001 AT1G44960 278 / 2e-94 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10014818 pacid=23150224 polypeptide=Lus10014818 locus=Lus10014818.g ID=Lus10014818.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTCGAAGTATTGCGGTAGAAATTGGGGGTTTGACTGGGAGTACCGGCGGCATTAACAGGATTGGAATGAGGGACGAAGAGAAGGCCAAAG ATGACGATTCTCCGTCCAGCAAGAAATCTAAGTTGGAGAGGTTCCCCTGTTCTAGTTGGGAATTCGCTGCTGCTATCTCCGTTTTCCTCGTCTTCTCCAC AGGTTTGTTCTGCATCTACCGTACCATGCCTGCTGCCGAGTACGGGAAGCTCAAAATCCCTCGCACTGTCTCGGATCTCCGATTGCTCAAAGAACATCTT GGAACATATGCAAAAGATCATCCCGCACAGTTCATCCTCGGCTACTGCTCAACATACATCTTCATGCAGACCTTCATGATTCCAGGAACAATTTTCATGT CATTGCTTGCTGGAGCTCTATTTGGTGTTATTAGGGGACTTTTCTTGGTTGTTTTCAATGCAACAGCGGGAGCATCTTCTTGCTTCTTTCTGTCTAAGCT GATCGGCCGTCCTCTCGTTAGCTGGTTGTGGCCTGATAAGTTGAGATTTTTCCAAGGAGAGATAGTAAAACGTCGGGAAAAGCTACTGAATTACATGCTC TTCTTGAGGATAACACCGACGTTGCCTAACTTATTCATCAATTTGGCATCTCCTATTGTTGACATACCGTTTCATATTTTCTTTTTGGCTACTTTGATTG GTCTCATCCCAGCATCTTATATTACCGTGAGGGACTGA
AA sequence Show only first row Show all	>Lus10014818 pacid=23150224 polypeptide=Lus10014818 locus=Lus10014818.g ID=Lus10014818.BGIv1.0 annot-version=v1.0 MAAPRSIAVEIGGLTGSTGGINRIGMRDEEKAKDDDSPSSKKSKLERFPCSSWEFAAAISVFLVFSTGLFCIYRTMPAAEYGKLKIPRTVSDLRLLKEHL GTYAKDHPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLFLVVFNATAGASSCFFLSKLIGRPLVSWLWPDKLRFFQGEIVKRREKLLNYML FLRITPTLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	0	1
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	7.4	0.8020
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	8.0	0.8247
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	8.4	0.8133
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	8.5	0.8316
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	9.9	0.8267
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	10.1	0.8325
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	10.4	0.8114
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	15.8	0.7344
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	16.3	0.7986
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	16.5	0.7937

Compare expression of checked genes

Lus10014818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.