Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35680 187 / 9e-60 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) AT4G30930 71 / 1e-14 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017912 [exp] 373 / 6e-133 AT1G35680 213 / 4e-70 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10015441 [exp] 73 / 5e-15 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10011178 [exp] 72 / 6e-15 AT4G30930 218 / 2e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083400 [exp] 209 / 4e-68 AT1G35680 173 / 3e-54 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.013G112900 [exp] 197 / 1e-63 AT1G35680 157 / 6e-48 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.015G095700 [exp] 84 / 4e-19 AT4G30930 181 / 6e-56 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [flax] [poplar] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Lus10014819 pacid=23150239 polypeptide=Lus10014819 locus=Lus10014819.g ID=Lus10014819.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCTCTTACGCACTCTCACTCTGCTCTTCCTTCAATGCCCACTGCAAAATCAACTCCTCCCACCACCAAAACCTTCACTCAATCTCAAAGC CCCTCTCTTTTGCCAATCCCAGTTGTGGGTCCTTCTTCAAACTTCCGCAAAGGCTCACCTTCTCTTCTAATCATCTTCCCTTGGTTGTGACCAAAGTCTC TGAAATTGAAGCTCCATCCGTCACCGAACCGGATACTCCAGCCCCCGACTCCGAGGTTATAGCCGAGCCAACCCAGATTGTCGATGTTGCTAAGGAAGAA GCTAAACGTGAAGAGATTTTCGCTGTTGTTATGGTGGGCGGACGACAATACATTGTAATCCCTGGAAGATTTCTCTATGTTCAGAGGTTGAAAGGCGCAA ATGTCAATGATAAGATCGCCTTAAACAAGGTGTTGCTAGTGGGAACAAAAACGACTACCTACATAGGGAAACCTGTAGTAACAAATGCAGTTGTTCATGC TGTAGTTGAAGAGCAGGGATTGAACAAGAAAGTCATCGTCTTCAAGTATAAGAAGAAGAAGAACTACAGGAGGAAGATTGGCCACAGACAGCCAAACACA AGAATCAGAATTACAGGCATCACCGGATTTGAAAACTACCCAGGTGCCACCCTCGAATCAGTAGCTGCTTCAAGTTGA
AA sequence Show only first row Show all	>Lus10014819 pacid=23150239 polypeptide=Lus10014819 locus=Lus10014819.g ID=Lus10014819.BGIv1.0 annot-version=v1.0 MASTSYALSLCSSFNAHCKINSSHHQNLHSISKPLSFANPSCGSFFKLPQRLTFSSNHLPLVVTKVSEIEAPSVTEPDTPAPDSEVIAEPTQIVDVAKEE AKREEIFAVVMVGGRQYIVIPGRFLYVQRLKGANVNDKIALNKVLLVGTKTTTYIGKPVVTNAVVHAVVEEQGLNKKVIVFKYKKKKNYRRKIGHRQPNT RIRITGITGFENYPGATLESVAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	1.0	0.9768
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	1.4	0.9701
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	2.0	0.9686
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	3.0	0.9687
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	4.2	0.9539
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	4.2	0.9598
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	4.9	0.9569
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	5.3	0.9595
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	5.5	0.9604
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	6.6	0.9514

Compare expression of checked genes

Lus10014819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.