Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71880 489 / 2e-171 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 483 / 1e-168 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 479 / 2e-167 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G66570 435 / 3e-150 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 426 / 5e-147 ATSUC8 sucrose-proton symporter 8 (.1) AT5G06170 425 / 2e-146 ATSUC9 sucrose-proton symporter 9 (.1) AT5G43610 422 / 2e-145 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 325 / 7e-107 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 270 / 8e-85 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017910 [exp] 726 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 495 / 4e-173 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 463 / 6e-161 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 450 / 1e-155 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 449 / 2e-155 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 448 / 6e-155 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 441 / 3e-154 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10007702 [exp] 403 / 8e-138 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 326 / 2e-107 AT1G09960 694 / 0.0 sucrose transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 507 / 4e-178 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 500 / 2e-175 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 331 / 2e-109 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 156 / 6e-42 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 153 / 4e-41 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03209 [flax] [poplar] PUCC PUCC protein
Representative CDS sequence Show only first row Show all	>Lus10014821 pacid=23150175 polypeptide=Lus10014821 locus=Lus10014821.g ID=Lus10014821.BGIv1.0 annot-version=v1.0 ATGATCGTCCAGCCCATAGTCGGCTACCACAGCGACCGCTGCACTTCCCGCTTCGGCCGCCGCCGCCCCTTCATCGTGGGTGGCACCGCCTGCGTTGCCA TAGCCGTCATCCTCATCGGGTTCGCAGCCGATATCGGCCACTCCGCCGGGGACGACCTTGCCAAGGCGTCCAAGCCGCGGGCCATCGCGGTATTCGTGGT CGGGTTCTGGATACTTGACGTGGCTAATAACATGCTGCAGGGACCATGCCGGGCCCTGCTGGCGGATTTGTCCGGGACAAGTAGCCGGAAGACGAGAGTG GCCAACGCCTTCTTTTCCTTCTTTATGGCGGTTGGGAATGTGTTGGGGTACGCGGCTGGTTCGTATAACAAGCTGTATATGATGTTTTCATTCACTAAAA CGACGGCGTGTGATGTGTACTGTGCTAACTTGAAGACCTGCTTCTTCATCTCCATCACCTTGCTCCTCCTCCTCACTGTTTTAGCCCTCTGGTACGTGAG GGAGAAGCAATGGTCGCCGGAGCAAGCAACGGCAGCGGACGGAGAGGAACTCCCAGAAACGACGGCGGAACCGATGCTGTGCGAGCTATTCACGGCGATA AAGACGATGAAAAAGCCGATAGAAGTCTACGGCGGGGATTCAGCTGGAAACAAAGCTCAGATAAGCGCGTACGGACATGGTGTCCGCGCCGGTTCGTTGG GGCTGATGCTTAACTCGGTGGTCCTCGGTGTCATGTCGCTCGGGGTTGAGTCGGTCGGCAGGTGGGTCGGCGGGGTGAAGCGGCTGTGGGGCATCGTCAA TTTCCTGCTGGCCATCTGCCTGGCTCTGACGGTTGTGATCAGTAAGGTGGCCGAGTCGGAACGGGCGTCGGCTGATAGCCCAACTCCGCCGTCAGCCGGG GTATTCGCCGGTGTCATGACGCTTTTCTCCGTCCTCGGCGTCCCGCTTGCGATAACTTATAGCATTCCGTTCGCCTTGGCTTCAATATTTTCTCATTCCT CCGGTACCGGACAAGGGTTGTCGCTTGGAGTATTGAATCTTTCGATCGTTGTACCTCAGATGATCATATCGTTGCTGAGCGGGCCGTGGGACGCACTGTT TGGAGGAGGAAATTTGCCAGCATTTGTGGTGGGAGCAGTAGCAGCAGCTGCGAGTGGAGTACTTGCCCTCACTCTGCTACCATCACCACCCCCAGATGTT CCCACTTCCAAAACTAGTCTTGCTGGTGGCTTCCATTAA
AA sequence Show only first row Show all	>Lus10014821 pacid=23150175 polypeptide=Lus10014821 locus=Lus10014821.g ID=Lus10014821.BGIv1.0 annot-version=v1.0 MIVQPIVGYHSDRCTSRFGRRRPFIVGGTACVAIAVILIGFAADIGHSAGDDLAKASKPRAIAVFVVGFWILDVANNMLQGPCRALLADLSGTSSRKTRV ANAFFSFFMAVGNVLGYAAGSYNKLYMMFSFTKTTACDVYCANLKTCFFISITLLLLLTVLALWYVREKQWSPEQATAADGEELPETTAEPMLCELFTAI KTMKKPIEVYGGDSAGNKAQISAYGHGVRAGSLGLMLNSVVLGVMSLGVESVGRWVGGVKRLWGIVNFLLAICLALTVVISKVAESERASADSPTPPSAG VFAGVMTLFSVLGVPLAITYSIPFALASIFSHSSGTGQGLSLGVLNLSIVVPQMIISLLSGPWDALFGGGNLPAFVVGAVAAAASGVLALTLLPSPPPDV PTSKTSLAGGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	0	1
					Lus10024104 [exp]	1.4	0.9572
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	1.7	0.9281
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10036695 [exp]	5.1	0.8941
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	5.7	0.9301
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	7.5	0.8896
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	7.9	0.9206
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	8.8	0.9106
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	9.2	0.9278
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	9.2	0.9276
					Lus10042963 [exp]	9.9	0.9155

Compare expression of checked genes

Lus10014821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.