Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 454 / 3e-155 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 321 / 3e-103 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 307 / 2e-98 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 296 / 2e-95 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 189 / 1e-54 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G35625 179 / 2e-52 RING/U-box superfamily protein (.1) AT2G17450 65 / 9e-12 RHA3A RING-H2 finger A3A (.1) AT1G53010 63 / 2e-11 RING/U-box superfamily protein (.1) AT4G09120 66 / 3e-11 RING/U-box superfamily protein (.1) AT1G20823 63 / 3e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016936 [exp] 676 / 0 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10006074 [exp] 531 / 0 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 390 / 7e-130 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016934 [exp] 254 / 2e-81 AT1G71910 54 / 3e-09 unknown protein Lus10041896 [exp] 194 / 2e-56 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 191 / 2e-55 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10000053 [exp] 148 / 1e-41 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10033425 [exp] 70 / 1e-13 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10022743 [exp] 67 / 1e-12 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 518 / 2e-180 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 476 / 1e-163 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 183 / 8e-53 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.013G114000 [exp] 81 / 4e-17 AT1G71910 48 / 7e-07 unknown protein Potri.019G084500 [exp] 77 / 6e-16 AT1G71910 / unknown protein Potri.003G176500 [exp] 72 / 6e-13 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.006G190500 [exp] 69 / 4e-12 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 69 / 5e-12 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G075200 [exp] 65 / 5e-12 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.003G106600 [exp] 68 / 1e-11 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10014823 pacid=23150170 polypeptide=Lus10014823 locus=Lus10014823.g ID=Lus10014823.BGIv1.0 annot-version=v1.0 ATGGCCGACGAGTTCAGCTTCCCCACCACAACCTCCGCCACCGGCGTTGAGTCGCCGCCACTTTGGCGCCTCTCCCCCTCCGCCTCTCCACACCACCGCC ACCAAAGAAAGAGCTTTTCCCATGCGGCCGAGCACCGTACAGACGCCAACAACAATCATCATCATAATAATTCTAGAGTAGAGAAGAAGATGGACATGTT GTGGGAAGACTTCAACGAGGAGGAACTCATCACCAGCTCCAGGTCACCACGAGTCTACCCTGTGCTCGACCGCAGGGGATCATTTTCACTCCACCACTGT CATAATAAGAGATCGTCAGGAGGCGCCGTGGTAGACGTGGGATGCGTTGAAGGCCGCCTTAGACTCTCTCCCAAACGGCCGCCTACTAGTACTAGTGCCA GCGGTGGTACTAAGCCTGGGTTGGTGGTGCTCATCAAGGTGTTGAAGAGACTTTTCTTGTTTCACCACAAACATACCGCCCGGAGACCCACGCCGGCCCC GTCGTCGGTCAAGGTTAGCCCTGGTCTTTGGATGGAAAGAACAAAGTTGCTTCTAAAGCGAGTTGATGCGAATGGATTTGAAAATGTGCGTAGGAAATAT CGTCTTCACACGCGTTGTTTCACGAGTTGGGCAAGTGTGGTTCTAATTGGGAATAATGTCACTATGTCTTTCGATGACATTGAAGCGAATTTTGGACCGC CGGTAAAGAGTTCAGGTGAATATGGAGTGTTGTATGTGGCGGTGCCTCTAGATGCCTGTTCGGATTTGACTAATAAAGTGGAAAAGGTAGGGAATTCTAG CTCATCACCGTTTTTGCTGATCATAAGAGGAGGGTGCAGCTTTGAAGATAAAGTTAGAAGAGCACAGGCAGCTGGCTTCCATGCTGCTATCGTTTACGAT AATGAAGACAGTGGTTTGTTGGTTGCAATTCCTGATCTTTTTCTCCAAATTGAAGTGGCAGGGAGTTCAGCTGGCATAAGGATTCATGCTGTATTTGTTG CAAAGTCTTCTGGTGAAACGTTAATGAAATATGCTGGCTTCACTGACATGGGGCTATGGATTATCCCCAGCTATGAAAATTCAGCTTGGTCTATAATGGC AATATCTTTCATTTCTTTGCTGGCAATGTCAGCAGTTTTGGCCACTTGTTTCTTTGTCCGGAGGCATCGGATAAGAAGACAGCGCCCACGCTCTTCTCGT GCTAGGGAATTTCACGGAATGAGCAAGCGACTGGTAAAAGCAATGCCAAGCTTGATTTTTACCACTGTTCAGGAGGATAATTGCACTTCTTCTACTTGTG CTATTTGCCTCGAAGATTACAGCGTTGGAGAAAAGCTTCGGATTCTGCCTTGTCAACACAAGTTCCATGCTCTCTGTGTGGATTCATGGCTTACTACATG GAGAACATTCTGTCCTGTATGCAAGAGAGATGCGAGAACTATTATGGGGGAGCCACCGGCATCTGAATCTACACCATTGCTTTCATCCAACCCTTCTTCA GTGGCTTCCTCGTCTGTACTGTCATCCTTTAGATCTACTACCTCATCAGCTATAAGAATCGGCCAGCCATCACGTTCCCCTTCACTTTCTCATTTCCCTT CGTATTCTGGAACTCCTTATGCCCAGCAGTCCGTTGGATCCCTTAGTATGAGCCGTAGCACTGCTGATCTTAGAAGCATGTCCTCACACCGCTCTCATGT GATTTCACCTTATCCAGTTGGTTACTCCTCCATTTCACCCCTCAACACTAGATTCATGTCTGTATACAACCAGAGTCCAAGCAATGCCTCACCGAGTATA GCTGGCTCGACGAGTTATCAGCCTCGCCCACCGCATTGTAGCGACTCTGCTGCAAGTTTCTCCCCATTTGCTTCTGCTCAGTCCCTTCCAGACTGTTAG
AA sequence Show only first row Show all	>Lus10014823 pacid=23150170 polypeptide=Lus10014823 locus=Lus10014823.g ID=Lus10014823.BGIv1.0 annot-version=v1.0 MADEFSFPTTTSATGVESPPLWRLSPSASPHHRHQRKSFSHAAEHRTDANNNHHHNNSRVEKKMDMLWEDFNEEELITSSRSPRVYPVLDRRGSFSLHHC HNKRSSGGAVVDVGCVEGRLRLSPKRPPTSTSASGGTKPGLVVLIKVLKRLFLFHHKHTARRPTPAPSSVKVSPGLWMERTKLLLKRVDANGFENVRRKY RLHTRCFTSWASVVLIGNNVTMSFDDIEANFGPPVKSSGEYGVLYVAVPLDACSDLTNKVEKVGNSSSSPFLLIIRGGCSFEDKVRRAQAAGFHAAIVYD NEDSGLLVAIPDLFLQIEVAGSSAGIRIHAVFVAKSSGETLMKYAGFTDMGLWIIPSYENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRQRPRSSR AREFHGMSKRLVKAMPSLIFTTVQEDNCTSSTCAICLEDYSVGEKLRILPCQHKFHALCVDSWLTTWRTFCPVCKRDARTIMGEPPASESTPLLSSNPSS VASSSVLSSFRSTTSSAIRIGQPSRSPSLSHFPSYSGTPYAQQSVGSLSMSRSTADLRSMSSHRSHVISPYPVGYSSISPLNTRFMSVYNQSPSNASPSI AGSTSYQPRPPHCSDSAASFSPFASAQSLPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71980			Protease-associated (PA) RING/...		Lus10014823 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	1.7	0.9148
AT1G31870			unknown protein		Lus10033140 [exp]	4.5	0.8932
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	9.9	0.8684
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	16.2	0.8796
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	17.2	0.8853
AT1G61240			Protein of unknown function (D...		Lus10006728 [exp]	23.0	0.8656
AT5G10750			Protein of unknown function (D...		Lus10026242 [exp]	23.3	0.8799
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	23.7	0.8696
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	24.6	0.8715
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	24.7	0.8766

Compare expression of checked genes

Lus10014823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.