Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09510 966 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 945 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G22650 943 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT4G34860 897 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G72000 887 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 588 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 578 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 561 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 556 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016938 [exp] 1126 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10006078 [exp] 1054 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10042390 [exp] 888 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 887 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10033144 [exp] 884 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10009441 [exp] 879 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10034525 [exp] 877 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10037817 [exp] 596 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 590 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110800 [exp] 1043 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.019G082000 [exp] 1031 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.009G129000 [exp] 894 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.004G167500 [exp] 891 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 888 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.002G173600 [exp] 740 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.008G101500 [exp] 594 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 589 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 588 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 583 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10014824 pacid=23150193 polypeptide=Lus10014824 locus=Lus10014824.g ID=Lus10014824.BGIv1.0 annot-version=v1.0 ATGGACGGGCATAAAGAGGTGGGACTGGGACTCAGGAATGTCAGCTCAACATGCTCCATTCCAGATTTGGACGACTTTGATCTTGCACGCCTCCTGGATA AGCCAAGGCTGAACATAGAAAGGAAAAGATCATTTGATGAGAGATCGTTAAGCGAGCTCTCGATTGGCCTGGGAAGAGGACTGGATAACTATGAGACACA CTCACCTGGAGGACGGTCTGGGTTTGACACTCCAGCATCATCAACAAGGAACTCCTTTGAACCCCATCCTATGGTAGCAGATGCTTGGGAAGCTCTCAGA AGATCTATTGTCAACTTCAGAGGTCAACCTGTTGGAACTATTGCTGCTGTAGACCATGCTTCTGAAGAGGTCTTGAACTATGATCAGGTTTTTGTGCGTG ATTTTGTGCCGAGTGCTCTGGCATTTCTTATGAATGGAGAGCCTGATATAGTAAAGCACTTCCTCTTAAAGACATTGTATCTTCAAGGTTGGGAAAAGAG GATAGATCGGTTCAAGCTTGGAGAAGGAGTTATGCCTGCCAGTTTCAAGGTTCTTCATGACCCGAATAGGAAAACAGATACCTTGATGGCAGACTTTGGA GAGAGTGCAATTGGTAGGGTTGCTCCAGTTGATTCTGGATTTTGGTGGATCATTCTTTTACGTGCGTATACAAAGTCTACTGGGGATATGTCGCTGGCAG AGACACCGGAATGCCAAAAGGGGATGAGGCTCATTCTGTCATTGTGTTTATCAGAAGGGTTCGATACATTTCCTACATTGCTTTGTGCTGATGGATGTTC TATGATTGATCGTAGAATGGGTATATATGGTTATCCGATTGAGATTCAAGCACTTTTCTTTATGGCTTTGCGATCTGCTTTGTCCTTGTTAAAGCATGAC GCAGAAGGGAAAGACATGATTGAGAGAATCGTGAAACGTCTGCATGCCTTGAGTTTTCACATGCGGAGTTACTTTTGGCTAGACTTCCAACAACTGAATG ATATATACAGATACAAAACGGAGGAGTACTCTCATACTGCAGTAAATAAGTTCAATGTTATTCCAGATTCAATCCCTGATTGGGTGTTTGATTTTATGCC ATGCCGTGGTGGCTACTTTATCGGCAACGTAAGTCCAGCCAGGATGGATTTCCGTTGGTTTGCTTTAGGAAATTGTGTTGCCATTCTTTCCTCTCTTGCC ACTCCAGAACAATCAGTGGCTATCATGGATCTCATCGAAGCTCGCTGGGACGAGTTGGTTGGAGAAATGCCTCTCAAAATAGCTTACCCTGCAATTGAGG GCCATGAATGGAACATTGTAACAGGCTGTGATCCTAAGAATACAAGGTGGAGTTACCACAATGGAGGGTCTTGGCCAGTACTTTTGTGGATGCTGACGGC TGCATGCATCAAGACTGGAAGACCCCAAATCGCAAGAAAAGCAATTGATCTTGCGGAGACACGGCTGCTCAAGGACAGCTGGCCGGAGTACTATGATGGG AAGCTTGGTAGATATGTCGGGAAGCAAGCAAGGAAATATCAAACATGGTCCATTGCTGGATATTTGGTGGCAAAGATGATGCTGGAAGATCCTTCACATT TAGGGATGATCTCTCTCGAAGAGGACAAGCAAATGAAGCCAATGCTCAAGAGATCATCCTCTTGGACATGCTAA
AA sequence Show only first row Show all	>Lus10014824 pacid=23150193 polypeptide=Lus10014824 locus=Lus10014824.g ID=Lus10014824.BGIv1.0 annot-version=v1.0 MDGHKEVGLGLRNVSSTCSIPDLDDFDLARLLDKPRLNIERKRSFDERSLSELSIGLGRGLDNYETHSPGGRSGFDTPASSTRNSFEPHPMVADAWEALR RSIVNFRGQPVGTIAAVDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLYLQGWEKRIDRFKLGEGVMPASFKVLHDPNRKTDTLMADFG ESAIGRVAPVDSGFWWIILLRAYTKSTGDMSLAETPECQKGMRLILSLCLSEGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQALFFMALRSALSLLKHD AEGKDMIERIVKRLHALSFHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPCRGGYFIGNVSPARMDFRWFALGNCVAILSSLA TPEQSVAIMDLIEARWDELVGEMPLKIAYPAIEGHEWNIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKTGRPQIARKAIDLAETRLLKDSWPEYYDG KLGRYVGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPMLKRSSSWTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	0	1
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10016938 [exp]	1.0	0.9550
AT4G34660			SH3 domain-containing protein ...		Lus10028783 [exp]	9.9	0.8470
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	9.9	0.8814
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	10.2	0.8641
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	14.0	0.8558
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	14.4	0.8405
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	16.7	0.8500
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	18.0	0.8781
AT5G55000		FIP2	potassium channel tetramerisat...		Lus10020270 [exp]	25.5	0.8353
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	28.4	0.8674

Compare expression of checked genes

Lus10014824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.