Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33030 270 / 9e-89 O-methyltransferase family protein (.1) AT5G54160 255 / 1e-82 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 212 / 1e-65 O-methyltransferase family protein (.1) AT1G63140 191 / 1e-57 O-methyltransferase family protein (.1.2) AT5G53810 177 / 2e-52 O-methyltransferase family protein (.1) AT1G77530 176 / 1e-51 O-methyltransferase family protein (.1) AT1G51990 174 / 1e-51 O-methyltransferase family protein (.1.2) AT1G21100 174 / 2e-51 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 174 / 3e-51 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G76790 171 / 3e-50 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009442 [exp] 357 / 1e-122 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10005133 [exp] 247 / 1e-79 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10032929 [exp] 241 / 5e-77 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 238 / 8e-76 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10002667 [exp] 236 / 4e-75 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10016939 [exp] 215 / 2e-69 AT5G54160 120 / 1e-32 O-methyltransferase 1 (.1) Lus10006146 [exp] 214 / 9e-67 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002669 [exp] 208 / 2e-64 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014400 [exp] 167 / 1e-48 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G451100 [exp] 292 / 5e-97 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 288 / 1e-95 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 254 / 1e-82 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 255 / 2e-82 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 254 / 3e-82 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 253 / 4e-82 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 253 / 4e-82 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 253 / 5e-82 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 246 / 1e-79 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 246 / 4e-79 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10014825 pacid=23150228 polypeptide=Lus10014825 locus=Lus10014825.g ID=Lus10014825.BGIv1.0 annot-version=v1.0 ATGGAAGTTCAAGAAGATCATCACGTTCAAGAGGACGAGCTGTACGCGATGCAGCTTGCAACCTCATCGGTGATGCCCATGGCGCTGAAAGCAGCGATCG AGTTGGGCGTATTCGACATCATTAACTTAGCTGGCCCAGCAGAAGCTTCCCAAATCGCTTCTAAACTTGATATGGCATCGGGCCACCACACTGAAATAGC AGAGCGACTGGATCCTATTCTGCACCTCCGGTCTTCCCATTTCATCCTGGTCGCTTCTTCATCTCCTGATGGTGGTAGGACAACTTACGCGCTAGCTCCC ATGGCTAAATACTTCCTCAAGGTGGATGATGGTGATCGAAAGGGGAGTTTGAGTCCTTTTGTGTCATTGGTTCAGGACAAAGTCATTATCGATGCCTTGG TATGGAGTCATGAAGAAGATCAAAGGTTCAGAGAGGTTTTCAGCCGCTCCAATTCAGAGTTCAGCCCTCCGGCTACTGAGACAATCCTGGACAGGTACTG TCACCAAGGTTTTGCAGGTCTTGAGTCGCTTGTTGATGTTGGTTGTGGTAATGGATCCACCCTTCACCTCATCCTCTCCAGAGTTCCTACCGTTTCTAAG GCCATCAACTTCGATTTGCCTTCCGTCATCACCAACTCTCCATCCTATCCAGGTGTGGAGCATGTTGCAGGTGATATGTTTGAAAGTGTCCCAAAAGGAG ATGCAAACTTCATCAAGTGGGTTATGCACGTGTGGGAAGATGAGGAGTGCCTGAAACTACTGAGGAACTTCTACAAAGCAACACCTGAGAATGGTAAAGT GGTGGTTGTGGATACTGTGATTCCAGAGACCTCTGAAACCACTGCTGCTGCAAAACCCTTGCTTCAGTTCAACCTCTATAGAAACGGGGTCAAACCTCAT GGCAAGGAAAGGACTATCACACAGTTTCAAAGCTTGGCTCAACAAGCTGGATTTGCAAGTGTTCGCATGGCTTGTTCTGCGTTTAACTTCTTGGTTCTTG GGCTCCTCAAAACTCAGACATGCATCTAA
AA sequence Show only first row Show all	>Lus10014825 pacid=23150228 polypeptide=Lus10014825 locus=Lus10014825.g ID=Lus10014825.BGIv1.0 annot-version=v1.0 MEVQEDHHVQEDELYAMQLATSSVMPMALKAAIELGVFDIINLAGPAEASQIASKLDMASGHHTEIAERLDPILHLRSSHFILVASSSPDGGRTTYALAP MAKYFLKVDDGDRKGSLSPFVSLVQDKVIIDALVWSHEEDQRFREVFSRSNSEFSPPATETILDRYCHQGFAGLESLVDVGCGNGSTLHLILSRVPTVSK AINFDLPSVITNSPSYPGVEHVAGDMFESVPKGDANFIKWVMHVWEDEECLKLLRNFYKATPENGKVVVVDTVIPETSETTAAAKPLLQFNLYRNGVKPH GKERTITQFQSLAQQAGFASVRMACSAFNFLVLGLLKTQTCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	0	1
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	2.0	0.7962
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	3.9	0.7887
AT5G01750			Protein of unknown function (D...		Lus10014021 [exp]	4.9	0.7492
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	6.3	0.8031
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	13.2	0.7728
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	13.9	0.8030
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	15.7	0.8003
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	17.0	0.7568
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10028899 [exp]	21.5	0.7331
AT4G02210			unknown protein		Lus10027531 [exp]	22.6	0.7381

Compare expression of checked genes

Lus10014825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.