Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17200 296 / 9e-96 Pectin lyase-like superfamily protein (.1) AT4G35670 277 / 6e-89 Pectin lyase-like superfamily protein (.1) AT3G15720 276 / 8e-88 Pectin lyase-like superfamily protein (.1.2) AT5G27530 273 / 2e-86 Pectin lyase-like superfamily protein (.1) AT5G44840 246 / 6e-77 Pectin lyase-like superfamily protein (.1) AT5G44830 241 / 7e-76 Pectin lyase-like superfamily protein (.1) AT4G32375 245 / 2e-75 Pectin lyase-like superfamily protein (.1) AT3G07970 243 / 7e-75 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT4G32370 237 / 4e-74 Pectin lyase-like superfamily protein (.1) AT1G80170 236 / 1e-72 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016940 [exp] 712 / 0 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10040610 [exp] 372 / 9e-125 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 313 / 2e-102 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10040604 [exp] 284 / 6e-92 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10002727 [exp] 277 / 6e-89 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10036035 [exp] 271 / 5e-87 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10018302 [exp] 265 / 1e-85 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 240 / 8e-74 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 239 / 5e-73 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028700 [exp] 331 / 6e-109 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.012G119700 [exp] 324 / 4e-107 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 261 / 1e-82 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 256 / 2e-80 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 235 / 9e-72 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 230 / 8e-70 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 229 / 1e-69 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 221 / 1e-66 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 219 / 2e-65 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 218 / 2e-65 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10014826 pacid=23150151 polypeptide=Lus10014826 locus=Lus10014826.g ID=Lus10014826.BGIv1.0 annot-version=v1.0 ATGTTCTCTGGGTGCAGTAAAGCTATGGAGGCTAAATACGTTATTACAAGAAGCAGCTTAGGTTCGGGATTCTCCTTGTTATTGATGCTGCTGTTGTTCC CTCACACTTGTAGTTGTTCCTCTTCTTCTCCTAGGCTGCTGGACAATATTAGTAGATCATCATCATCATCATCAAACATCTTCAATGTCCTCGACTATGG AGCTGTGGGAGACGGCAAAACCGACGATTCCCAGAGATCCTGGGTTCGAAGTCCGGAATGCGTGCGGCGCGCTCCTGTGACGACACCATCGGTCTCACCT GGGCTGACAATTGACAGCCTCGAAATTTACTTAACGGCGACATCACTAAATGTGGTGCCTGTCGAAAGGGTTCTTCGTGCGTTCCTGAAAGCATGGAAGG ATGCTTGTGGAGCAGAGGTTGCAGGAGGAGGGATTGGAATTCCAACAGTGGTATTACCAAGGCGGCCGAGTAAGGAGGATGATGAATTCCTAGTGAACCC AGTTATGTTCCGTGGTCCATGTAACTCCCGACACCTTCATTTTCAGGTGGGAGCAAATGTAGTGGCCCCAAACAAGACAGAAGCGTGGGGTGATAACAGG GAGGCGTGGATTGGATTCGTGAACGTCGACGGCTTAAGTTTGAACGGTGGAGGTTCCTTTGACGGCCGGGGTCTCATTTGGTGGCATTTATGCAATACCC AACGCAACTGCACTCGACCAACTGCGTTGTTCTTCAACAACTGTAATCGGCTAAGAGTGAGCAAACTGAGACACCTAAACAGTCCCCGAAACCACATCGG CGTAGCGTCCTCCTCCAACGTCAAAATCTCCAACCTACACATCTCCGCCCCGGAAGACTCCCCCAACACCGACGGAATCGACATATCCGGCTCCACCTAC ATATACGTTGAAGACACCTTCATCCGTACCGGTGACGACTGCATCGCCGTCAACGGCTTCTCTTCCTACATAACCATTAGTAAGGTGGTGTGTGGGCCAG GACACGGCATCAGTGTCGGAAGCCTGGGAGAGGACGGAGCCTACCAGACCGTGTCCGATGTTCATGTCAAAGACTGCGTCTTTAACCGCACTCTTAATGG CGCCCGCATCAAAACTTGGAAGGGGGGGAGTGGGTACGTGAAGAAGATCAAGTTCGAGAGGATAACTCTGATAGATTCAGGGAACCCCATCATTATAAAC CAAGATTATGTCGACAACAGCAGTTTAGGCCCCGCGCCGGGGTCCAACATCCAAATCAGCGAGGTCTCGTACGACGGTGTGGTGGGAACATCGAGCGAAG GGAGGTCGATTTACTTCAACTGCGAACAAGGGTCGTCTGGGATGGGGTGCACTGACATATTTGTAAACAACGTTCACATCAGCGCCGGAACACCGGGCGT GGAGCGGCTGTATGCTGTCTGCATTAACGCTCACGGCAATTACAACTCTTCGTTTCCGACTGTGCCCTGCCTTTCGCCCTTGTAA
AA sequence Show only first row Show all	>Lus10014826 pacid=23150151 polypeptide=Lus10014826 locus=Lus10014826.g ID=Lus10014826.BGIv1.0 annot-version=v1.0 MFSGCSKAMEAKYVITRSSLGSGFSLLLMLLLFPHTCSCSSSSPRLLDNISRSSSSSSNIFNVLDYGAVGDGKTDDSQRSWVRSPECVRRAPVTTPSVSP GLTIDSLEIYLTATSLNVVPVERVLRAFLKAWKDACGAEVAGGGIGIPTVVLPRRPSKEDDEFLVNPVMFRGPCNSRHLHFQVGANVVAPNKTEAWGDNR EAWIGFVNVDGLSLNGGGSFDGRGLIWWHLCNTQRNCTRPTALFFNNCNRLRVSKLRHLNSPRNHIGVASSSNVKISNLHISAPEDSPNTDGIDISGSTY IYVEDTFIRTGDDCIAVNGFSSYITISKVVCGPGHGISVGSLGEDGAYQTVSDVHVKDCVFNRTLNGARIKTWKGGSGYVKKIKFERITLIDSGNPIIIN QDYVDNSSLGPAPGSNIQISEVSYDGVVGTSSEGRSIYFNCEQGSSGMGCTDIFVNNVHISAGTPGVERLYAVCINAHGNYNSSFPTVPCLSPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	0	1
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	1.7	0.7938
					Lus10019251 [exp]	3.0	0.7492
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	4.2	0.7522
AT3G57680			Peptidase S41 family protein (...		Lus10011300 [exp]	17.7	0.7028
					Lus10026491 [exp]	18.0	0.6476
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	20.8	0.6470
					Lus10016118 [exp]	21.2	0.6470
					Lus10008674 [exp]	21.9	0.7484
AT1G15170			MATE efflux family protein (.1...		Lus10042732 [exp]	26.2	0.6002
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	35.9	0.6435

Compare expression of checked genes

Lus10014826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.