Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22620 1388 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G14205 700 / 0 Phosphoinositide phosphatase family protein (.1) AT3G43220 665 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 663 / 0 Phosphoinositide phosphatase family protein (.1) AT1G17340 605 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51830 131 / 1e-31 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT5G66020 127 / 2e-30 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51460 125 / 1e-29 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT3G59770 106 / 4e-23 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027650 [exp] 710 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 698 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 696 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 676 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 546 / 0 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 127 / 4e-30 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 124 / 3e-29 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 112 / 1e-25 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 102 / 4e-22 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080300 [exp] 1444 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 1387 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 734 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 727 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 722 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 720 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.005G100500 [exp] 129 / 7e-31 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 117 / 7e-27 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 96 / 1e-19 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10014827 pacid=23150216 polypeptide=Lus10014827 locus=Lus10014827.g ID=Lus10014827.BGIv1.0 annot-version=v1.0 ATGTCGAAATCGGAGAGTTCGAAATCCAACAACCCGGCGGGAAGTACCGCCGCTAAAATCCATCCCTCTAATGACTTTGAAATCAATCCCCTCGATCACT CCATCGAGAAGTTCAAGCTCTACGAGACTAGACAGAGGTTTTATTTAATTGGGAGCGACAGGAACAAGAGGTTCTTTCGTGTATTGAAGATTGATCGGTC AGAGCCATCTGATCTGAATATCAGCGAAGATCCCGTAGTTTATTCTCCTCAAGAAATAAAAAGCTTGCTTCAGCGAATTGCTGAAGGAAATCGCTCAACT GGTGGCCTGACTTTTGTGGCGAAGGTTTATGGAATTGCAGGTTGTATAAAGTTTCTGGAGTCCTATTATTTGATTTTGGTTACGAAGCGTCGACAAATAG GTTGTATATGTGGCCATGCTATATATGGTATAGATGAGACTCAAATGATTGCTGTCCCCCATGTCTCTATTCAGACTGATGCTGCACATTCTAAGACTGA GCTGAGGTATAAGAAGCTGTTATCCAGCGTTGATTTGACCAAGGATTTCTTCTTCAGCTATACATATCCAATAATGCAATGTTTGCAGAAGAATATCTCT TCTGCTAGTGAAGTAAAGATTCCATATGATGACATATTTGTGTGGAACGAGTACTTAACACGGCCTATTCGGATTAGATGTGGTAATACTTTATGGACAA TTGCTTTGGTCCATGGGAACTTCAAGCAGACAAGGTTGTCAATCTTTGGCAGGGACTTCAGTGTTTCTTTGGTTTCAAGACGCTCTCGCCATTTTGCAGG GACTCGTTACCTAAAACGAGGACTGAATGATTGGGGAAGGGTAGCAAATGATGTTGAAACAGAGCAAATTGTCATCGATGAAGAGGCTGGGTCATGCAAG GGTAAAATGAGCTCAGTGGTGCAGATGCGTGGTTCTATTCCCCTTTTCTGGTCACAAGAAGCTTCCAGATTTAGTCCAAAGCCAGACATCGTCTTGCAAA GGTATGATCCAACTTATGAGGCAACAAAGCTGCATTTTGAGGACCTGATGAAGAGATATGGCAACCCGATCATTGTTCTTAACTTAATCAAGACTGTTGA GAAAAGACCCAGAGAAATGATGCTTAGGAGGGAGTTTGCAAATGCCGTTGGATATTTGAACACAATTCTTCCAGAAGAAAACCATTTGAAATTTATACAC TGGGACTTCCACAAATTTGCGAAGAGTAAATCGGCCAATGTTTTGGCTGTTTTGGGTGCTGTAGCAAGGGAAGCACTGGATTTGACTGGTTTCTATTATA GTGGTAAAACTAGTGTTGTTAAGAGGAAAGCCAATGCTCTTAGCCGAACAAGCACAGCAAGAGATGCTTCACTCAGGGATATAAGAAGTGGTTCGGGTGA ACTTGTAAGGGTTGGAAGCAGTAATGATCGTTTGAATTCTATTCTTAGTCGAGACAGAGAGAATGGTCATCCTCACAACAAAGAAGACAACTCAAGTTCT AACGGACCACGTTTCCAAAGTGGTGTTCTTCGTACTAACTGCATAGACTGCCTAGATCGCACCAATGTTGCTCAATATGCTTATGGTTTAGTAGCATTAG GACGTCAACTTCATGCAATGAATCTGACCGATGTGCCCAAAGTGGACCCCGATAGTTCAATTGCTGCAGCTCTCATGGATATGTATCAAAGTATGGGGGA CGCTCTTGCACACCAATATGGTGGTTCAGCTGCTCATAATACTGTGTTTACAGAAAGGCAGGGTAAGTGGAAAGCTACTACTCAATCAAGAGAGTTTATA AAGTCTATCAAGAGATACTACAGCAATGCCTATACTGATGGTGAAAAGCAGGACGCAATAAACTTGTTCCTTGGTTACTTCCGACCACAAGAAGGGAGAC CTGCTCTCTGGGAATTGGACACTGACTATTACCTTCATGTAGCAGCAGTTGGCGATGACCCTGCTGAGAGTGGCATTGAAACAACTAATTCGAGGGTTGG AGCAGTATTGAACCTTGCTCCTATTCCCGCTTGCAAGGAAGACTTCTCAAGGATGAAATTAACATCATTTGATAAATTGATCGAGCGGACTTCCAGTGCA ATAAGGGATGTTAGACTGTCTAGTGAACCTGATCACAGACCAGGCTATGGTGCTGGTACCTCTGGTGTGGCACCTGATGCAGCTGAAATCCAGCTGAAGA GTCCAAATTGGCTTTTCGGCCAGAGGAAAGATGGAGCGAGTAATGCTGATGCTAAAACAGCTGAGCAGGAAACCGAGAATGGTGGCCGGGAAGATGATGA TGTTGGTGCTCTATGTGATATAAATTGGCTCTCCTCGTCCACTGATGCCTCTGAAGAAGATATCTTCCAAAAATACCTGGCAACGACCTCTGTTGGTGAA GCCACAGGCTGGTGTGGTGGATCACTACTGGCTGATCAAGACGAAAACAGTGAGATATACAAACATTATGCCGAATTATGTCAGGGGCCTGCAAGGGAAC TCTTTGAGCATGATCCGGAACTGGAGCAGCATTATGCTGATGTCCTACGCATGAATGTGATTGAGGTCGTGGACAGTGCCTCGGTAGAAGCTGACATGGA AGCAACCCTAAACAATTATCAACAAATCGGCAGCGACCTGGGGATCTTGCCAAAGTCGTGTAAGCAGGTCGCGGATGATCCCAGTTGGCTAACTAGGTTG ATACTTGGAGAGGGAAAGACTAAAAGAGTGTGA
AA sequence Show only first row Show all	>Lus10014827 pacid=23150216 polypeptide=Lus10014827 locus=Lus10014827.g ID=Lus10014827.BGIv1.0 annot-version=v1.0 MSKSESSKSNNPAGSTAAKIHPSNDFEINPLDHSIEKFKLYETRQRFYLIGSDRNKRFFRVLKIDRSEPSDLNISEDPVVYSPQEIKSLLQRIAEGNRST GGLTFVAKVYGIAGCIKFLESYYLILVTKRRQIGCICGHAIYGIDETQMIAVPHVSIQTDAAHSKTELRYKKLLSSVDLTKDFFFSYTYPIMQCLQKNIS SASEVKIPYDDIFVWNEYLTRPIRIRCGNTLWTIALVHGNFKQTRLSIFGRDFSVSLVSRRSRHFAGTRYLKRGLNDWGRVANDVETEQIVIDEEAGSCK GKMSSVVQMRGSIPLFWSQEASRFSPKPDIVLQRYDPTYEATKLHFEDLMKRYGNPIIVLNLIKTVEKRPREMMLRREFANAVGYLNTILPEENHLKFIH WDFHKFAKSKSANVLAVLGAVAREALDLTGFYYSGKTSVVKRKANALSRTSTARDASLRDIRSGSGELVRVGSSNDRLNSILSRDRENGHPHNKEDNSSS NGPRFQSGVLRTNCIDCLDRTNVAQYAYGLVALGRQLHAMNLTDVPKVDPDSSIAAALMDMYQSMGDALAHQYGGSAAHNTVFTERQGKWKATTQSREFI KSIKRYYSNAYTDGEKQDAINLFLGYFRPQEGRPALWELDTDYYLHVAAVGDDPAESGIETTNSRVGAVLNLAPIPACKEDFSRMKLTSFDKLIERTSSA IRDVRLSSEPDHRPGYGAGTSGVAPDAAEIQLKSPNWLFGQRKDGASNADAKTAEQETENGGREDDDVGALCDINWLSSSTDASEEDIFQKYLATTSVGE ATGWCGGSLLADQDENSEIYKHYAELCQGPARELFEHDPELEQHYADVLRMNVIEVVDSASVEADMEATLNNYQQIGSDLGILPKSCKQVADDPSWLTRL ILGEGKTKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	1.0	0.9682
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	1.4	0.9592
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	2.4	0.9557
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	3.9	0.9500
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	4.1	0.9285
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	4.5	0.9517
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	4.9	0.9466
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	4.9	0.9354
AT2G32970			unknown protein		Lus10035309 [exp]	5.0	0.9220
AT3G14910			unknown protein		Lus10043078 [exp]	5.1	0.9320

Compare expression of checked genes

Lus10014827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.