Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08490 338 / 3e-110 SLG1 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 190 / 6e-55 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 187 / 9e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 186 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22150 188 / 4e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 186 / 4e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 186 / 5e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G37310 184 / 3e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 180 / 9e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04750 176 / 4e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016943 [exp] 565 / 0 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 199 / 3e-58 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 197 / 9e-58 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 189 / 3e-55 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027408 [exp] 187 / 1e-54 AT2G29760 405 / 5e-133 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 186 / 2e-54 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 186 / 3e-54 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 185 / 7e-54 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025273 [exp] 185 / 1e-53 AT2G37310 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134300 [exp] 405 / 1e-135 AT5G08490 977 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 198 / 2e-58 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 193 / 8e-57 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 194 / 2e-56 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 193 / 2e-56 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.006G245300 [exp] 195 / 3e-56 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 191 / 2e-55 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 189 / 2e-55 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G216100 [exp] 189 / 2e-55 AT2G37310 724 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 191 / 3e-55 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014828 pacid=23150161 polypeptide=Lus10014828 locus=Lus10014828.g ID=Lus10014828.BGIv1.0 annot-version=v1.0 ATGTTTAGAGAAAGAATTATACCAGACTCTATTACCATTCTAAGCGTTATCCTGTATTGTGAGAACATCTTGAGAGAAGATAAGATAAAGGAGGTCCATA GTTATTCAATTAGGCATCATTTCCTGGAATCTGACGAGCAACCTGAGGTTGGAAATGCACTACTTGCTGCATACGCTAAATGTGGCAGTATAGAGTATGC CTTCAAGGTTTTTCAAAGTCTGTCTGAGAAGAGGAATTCGATTTCCTTTAACTCCATGATTTCTGGTTATGTGAATCATGGATTGCATGATGAGGCTTAC ACCAATTTCAGGAGCATGCCCAGCATGGATCTCACAACTTGGAATCTTATGGTACGAGCATATGCCGAAAATGAGCATCCAAGTGAAGCTGTCAGTCTGT TCCATGACCTACTAGCTCAAGGTATGAAGCCAGATGAAGTTACTATTATGAGCCTCCTTCCGGGTGCACTGTTAGATGTATATGCAAAGTGCGGTAGCAT AGGATACGCCCGGAAAATTTTCCAGTCAACCCTGCATAAGGATATTGTCCTGTATACTTCCATGATTGGTGGATATGCAATGCATGGTATGGGGAAAGAG GCAGTTGGAACTTTCTCTCATATGCTTGAATTGGGTGTAAAGCCAGATCATGTGATTATAACTGCGGTTTTATCTGCTTGTAGCCATTCTGATCTTATGA ATGAGGGGCTGGAAATCTTCGACTCCATAGAGAAGGTATATAAAATGAAACCAACAGTAGAACAGTACTGCTGTGTGGTTGATCTCCTTGCTCAAGGTGG CCGAATAGGAGATGCATATTCCTTGGTAACAGGAATGCCAAATGGTGGTGGGAATGCGAATGTTTGGGGAGCTTTGTTGGGTGCCTGTAAAAGACCCACC ATGAAGTGGAACTAG
AA sequence Show only first row Show all	>Lus10014828 pacid=23150161 polypeptide=Lus10014828 locus=Lus10014828.g ID=Lus10014828.BGIv1.0 annot-version=v1.0 MFRERIIPDSITILSVILYCENILREDKIKEVHSYSIRHHFLESDEQPEVGNALLAAYAKCGSIEYAFKVFQSLSEKRNSISFNSMISGYVNHGLHDEAY TNFRSMPSMDLTTWNLMVRAYAENEHPSEAVSLFHDLLAQGMKPDEVTIMSLLPGALLDVYAKCGSIGYARKIFQSTLHKDIVLYTSMIGGYAMHGMGKE AVGTFSHMLELGVKPDHVIITAVLSACSHSDLMNEGLEIFDSIEKVYKMKPTVEQYCCVVDLLAQGGRIGDAYSLVTGMPNGGGNANVWGALLGACKRPT MKWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	0	1
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	1.0	0.8786
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	3.5	0.8544
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	3.7	0.8635
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	3.9	0.8623
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	4.6	0.8445
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	4.9	0.8473
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	5.9	0.8494
					Lus10008388 [exp]	8.5	0.8213
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	9.8	0.8413
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	10.1	0.8220

Compare expression of checked genes

Lus10014828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.