Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 998 / 0 Ribonuclease II/R family protein (.1) AT2G17510 279 / 3e-79 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) AT5G02250 81 / 2e-15 ATMTRNASEII, RNR1, EMB2730 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025614 [exp] 1798 / 0 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10028065 [exp] 818 / 0 AT1G77680 551 / 1e-179 Ribonuclease II/R family protein (.1) Lus10009879 [exp] 607 / 0 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 580 / 0 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 276 / 6e-78 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10039601 [exp] 88 / 4e-19 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10024387 [exp] 62 / 2e-09 AT5G02250 1066 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 1216 / 0 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 1186 / 0 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 287 / 5e-82 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.001G137401 [exp] 74 / 8e-15 AT1G77680 63 / 5e-12 Ribonuclease II/R family protein (.1) Potri.006G086200 [exp] 78 / 2e-14 AT5G02250 1085 / 0.0 ribonucleotide reductase 1, EMBRYO DEFECTIVE 2730, ARABIDOPSIS THALIANA MITOCHONDRIAL RNASE II, Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10014833 pacid=23150163 polypeptide=Lus10014833 locus=Lus10014833.g ID=Lus10014833.BGIv1.0 annot-version=v1.0 ATGATGAAAGGAGGAGGAGCAGTGACGAGTGCGGTCGGATCGATGGCGGTTGAAAGGGTTGAGGATGGCCACGGCAGGGCCAATGAGAAGGAGAGGAAGA AGAATCGCCGCCGATCCAATCGGCAATCCAAGTCGAGTTCTTTTAATCCGCCGCCTGTTTGTAGCTCAGTGAATGATTTAAAGGAGTTGCCATCTCATGC ATCCAGTGATGCCAACAAGAAGAAGACACGCAATGCAGCACAAGATTGCTCTTCGTCGAGGCAAGTTGATTCAGAAGCTCCTTCCACTGCGTCTGGTGTA GTTTTCAACTCTATGCCAATGAGGCGTGATCAGAGCGAACACCTTGTGCCAGGTGATATTAGTCGATCATCCCTTTCGATGTCATGGCCCGACCCAGTTC ATGATGAAGGCATCCATTCAAATGGTGGTTTGTGTATGGTGCACCCCCCATTTGGAAGCCACCCACAAGGGAAAATATACAATTCATACTGGTCAATGGA GGCTGTTAACGAGGCTTTGGAAAGAGGTGATACGTTCAAATCCTTGTTTCGGGTAAATGCACACAATAGGCTTGAGGCATACTGCAAAGTTGATGGACTT CCAACTGATATCCTCATAAGTGGATATCCTGCACAGAACCGCGCTGTAGAAGGTGATACTGTCGTCATCAAGATTGATCCTTTGTATTCATGGACCAGGA TGAAAGGGTCAAATGGACCCACTAACAGATTTGAGCCGGTTGAAGAGTCTAAAATACATGGCAGTGAGGCAGTTGATGCAAGTGGAAAGGGTAAAACTAA GATGGATGAATTTGGTGCTTCCACGGTTTCTGTTAGCTTGATGCCCTCACAAGAGTTTTCTTGTAATGAAGAGGATGGATCACTGGCTAGTGACTTCGTT AATGGCTATAATACTAGTAGCGGTTCAAGGGTTGAATCTTCTGTTCGACAAAACGGAGGTGAGATCTCTACAATGCAAGGTGAGAATGCACTGGAGAAAT TATGTACATTCATGAGTTTCTATCCATCAAAACGTCCTACTGGCAAAGTTGTAGCAATCATTGAGAAGTCTCCTCGGCGATATGGTATCGTTGGTTTCCT CAATGCCAAGCAGTGGCTTTACTACAGGGAAGAATTTGGCAAGGACCCTAGAAGGAATACGAATCCAGCTTTACCCATATCGGGCGACGAGTACATCCAA GTGACTCCTACTGACCCAAAGTTCCCAAAATTGTCTGTCTGTGTGGGGAGTTTACCTAGTTGCATCAAGAAGAGATTGGAAGAGGGAGATAAAACACTGG ACTTTGACTTAGTGGCTGCACATATCGAAAATTGGACTGAAGAAAGCCCTTCTCCACAAGCATGCATTACTCGTATTTTTGGTCGTGGAAGTGAAATGCA GCCTCAGATTAATGCAATATTATACGAGAATGCAATTTGTGTGTCTGACTTTTCTCCGGAGTCACTTTTGTGCCTTCCTGGGAAGACATGGGAGATACCA GAAGAGGAAATCCGCATCAGAAGGGACCTCAGGCATTTGTGCACTTTTACAATTGATCCTTCAACCGCCACGGATTTAGATGATGCTCTATCAGTTGAAA TTTTAGCTGGTGATATTGTTAGAGTAGGGGTCCACATTGCTGATGCATCCTATTTTGTTTCACCCAACACATCTTTGGATCACGAAGCTCAAAATCGGTC AACAAGTGTTTATATGGTCCGAGGTAAGTTACCAATGTTGCCTCCAGTTTTATCCGAGAATCTTGGCTCCCTCAATCCTGGAGTAAATAGGCTTGCATTC TCAATTTTCTGGGACTTCAACAGTAATGGGGATATTATTGATCGTTGGATTGACCGGACTGTGATGCAATCATGTTGCAAGCTTTCATATGAACATGCTC AGAAAATTATTGATGGTGATATTTGGAGCATGCCACAATTGTACGGTCAATTTGAATGGAACGATGTCATTAAGTCTGTTAAGATTCTTCACAAACTTTC AAAGGTTTTAAGGAAGAGGAGGTTTGATGATGGGGCCCTACAACTTGAAAGTTCAAAGGTTGTTTTTCTATTTGATGAGAATGGCATGCCATATGACTGT ACCTTCAGTGAACAAAAGGAATCGAATTGGCTTGTGGAGGAGTTCATGCTTTTGGCTAATATGACAGCCGCAGAGATCATAAGTAGAGCTTTCCCGGAAA CTGCGTTATTACGAAGACATCCTGAACCGAATATGCGCAAGCTAAGAGAATTCGAAGCATTCTGTAGCAAGCATGGCTTTGTGTTGGATACTTCTTCGTC TAGTAAGCTCCATAAATCATTGGAGTGGATCCGGGAGACACTTAAAGGTGATACAATGTTTATTGATATTCTTGTCACTTATGCTACAAAGTCGATGCAG CTGGCAACCTACTTCTGTAGTGGTGATCTGAAAACCAATGTTAATGACTGGGGTCATTATGCTTTGGCCGTCCCTCTATACACCCATTTTACGTCACCTT TACGGCGTTATTCTGATATCATAGTGCATCGTACGCTGAATGCTGTGCTTGAAGCTGAAAAATGTTACGTGAATCACCGCAAAAGAAAAATGTCTCGTGT ATTTTTGAGAAATGATGATGTTATGAGGTATTTCACTGGCATTAACATCGACAGAGATGCAGCTGAATCATTGGATGGGCGGGAAGCATTGTTGGCTGCA GCTCTAAAACATAGAGTCCCTTCTGCAGATTTACTTGCGGATCTAGCAGCGCATTGCAACGTTAGAAAACTGGCTAGCAGGCATGTCAAGGATTCCTGTA ATAAGCTCTACATGTGGATGTTATTGAAGAGAAAAAAGGTTTTGTTGTCGGAAGCTAGAGTTGTAGGTCTCGGACCAAGGTTCATGTCTGTTTACATTCA TAAACTTGCTATGGAACGCCGAATACACTATGATGAAGTCGAGGGGTTGTCGGCAGAATGGCTTGAAGCAACTTCGACCTTGGTGCTTAGCATATGCGCC AACAAACGCTCTTCCAGAAGAGCAGGTTCCAATTTCCGGAAGTCACTCAGCGAAGTGGCTTGTGTCGTAAATCCCTGTGACACAGAAGTAGACCCCGGTT CAGGCTCCCGAAGATTCGAAATTGATCCAGCAGTTTCTCCTCTTACTGTACGTGTCCTCTCAACAATCCCGGTAGCTCTGCATGCACTTGGTGGCGATGA TGGTCCCCTTGATATTGGGGTTAGCTTGTTCATCAGCTCTTATTTTAGCCGAAGTTGA
AA sequence Show only first row Show all	>Lus10014833 pacid=23150163 polypeptide=Lus10014833 locus=Lus10014833.g ID=Lus10014833.BGIv1.0 annot-version=v1.0 MMKGGGAVTSAVGSMAVERVEDGHGRANEKERKKNRRRSNRQSKSSSFNPPPVCSSVNDLKELPSHASSDANKKKTRNAAQDCSSSRQVDSEAPSTASGV VFNSMPMRRDQSEHLVPGDISRSSLSMSWPDPVHDEGIHSNGGLCMVHPPFGSHPQGKIYNSYWSMEAVNEALERGDTFKSLFRVNAHNRLEAYCKVDGL PTDILISGYPAQNRAVEGDTVVIKIDPLYSWTRMKGSNGPTNRFEPVEESKIHGSEAVDASGKGKTKMDEFGASTVSVSLMPSQEFSCNEEDGSLASDFV NGYNTSSGSRVESSVRQNGGEISTMQGENALEKLCTFMSFYPSKRPTGKVVAIIEKSPRRYGIVGFLNAKQWLYYREEFGKDPRRNTNPALPISGDEYIQ VTPTDPKFPKLSVCVGSLPSCIKKRLEEGDKTLDFDLVAAHIENWTEESPSPQACITRIFGRGSEMQPQINAILYENAICVSDFSPESLLCLPGKTWEIP EEEIRIRRDLRHLCTFTIDPSTATDLDDALSVEILAGDIVRVGVHIADASYFVSPNTSLDHEAQNRSTSVYMVRGKLPMLPPVLSENLGSLNPGVNRLAF SIFWDFNSNGDIIDRWIDRTVMQSCCKLSYEHAQKIIDGDIWSMPQLYGQFEWNDVIKSVKILHKLSKVLRKRRFDDGALQLESSKVVFLFDENGMPYDC TFSEQKESNWLVEEFMLLANMTAAEIISRAFPETALLRRHPEPNMRKLREFEAFCSKHGFVLDTSSSSKLHKSLEWIRETLKGDTMFIDILVTYATKSMQ LATYFCSGDLKTNVNDWGHYALAVPLYTHFTSPLRRYSDIIVHRTLNAVLEAEKCYVNHRKRKMSRVFLRNDDVMRYFTGINIDRDAAESLDGREALLAA ALKHRVPSADLLADLAAHCNVRKLASRHVKDSCNKLYMWMLLKRKKVLLSEARVVGLGPRFMSVYIHKLAMERRIHYDEVEGLSAEWLEATSTLVLSICA NKRSSRRAGSNFRKSLSEVACVVNPCDTEVDPGSGSRRFEIDPAVSPLTVRVLSTIPVALHALGGDDGPLDIGVSLFISSYFSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	0	1
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	1.0	0.8787
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	2.8	0.8332
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	4.6	0.8348
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	5.7	0.8371
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	5.9	0.8320
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	9.5	0.8008
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	11.3	0.8160
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	11.8	0.8160
AT5G40740			unknown protein		Lus10014617 [exp]	14.7	0.7761
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	15.5	0.8272

Compare expression of checked genes

Lus10014833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.