Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08240 128 / 8e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009881 [exp] 205 / 4e-69 AT4G08240 140 / 1e-43 unknown protein Lus10025615 [exp] 166 / 5e-54 AT4G08240 102 / 1e-28 unknown protein Lus10028066 [exp] 0 / 1 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086200 [exp] 132 / 3e-40 AT4G08240 152 / 2e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014834 pacid=23150173 polypeptide=Lus10014834 locus=Lus10014834.g ID=Lus10014834.BGIv1.0 annot-version=v1.0 ATGAAAGGAGTCGGAGGGCCGCTGCTTAACATCGGCGATCTGCTCAGCGATCTCGCCGACAAAGACGAAGCTCAGCAACAACAACCTCCTTCATCTTCAC GTGACGATCCATCTCCGACCGACTTTCCACCATCGACGGACCTCCTCAAGCTTTTCCAGGAAAACTACGAGCAGTTGAACGAGGCGCTCGAAGGGAGCGA TCCTGATTGGACAGCCTTGACCTTAAAGCTCTGCACATGTCTTGAAACTGCGAACAAATTGGTTCGATCCGCGAACTCGAATGCTGGCTTGCTGTGTGAG AAAGTCGCAGAGCTTGAGAAGCTTGTCAAGAGAGGGGATTCAGCAGTAGCAGCAGCTAAATCCATCCCTCTTTCACTTGGGCTAAAAGCCAGACTCCATA CTCCCAGTCTTCCATCTCAGGAAACTCACTAA
AA sequence Show only first row Show all	>Lus10014834 pacid=23150173 polypeptide=Lus10014834 locus=Lus10014834.g ID=Lus10014834.BGIv1.0 annot-version=v1.0 MKGVGGPLLNIGDLLSDLADKDEAQQQQPPSSSRDDPSPTDFPPSTDLLKLFQENYEQLNEALEGSDPDWTALTLKLCTCLETANKLVRSANSNAGLLCE KVAELEKLVKRGDSAVAAAKSIPLSLGLKARLHTPSLPSQETH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08240			unknown protein		Lus10014834 [exp]	0	1
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	5.9	0.9484
AT3G07580			unknown protein		Lus10016076 [exp]	9.6	0.9417
AT4G08240			unknown protein		Lus10009881 [exp]	11.0	0.9230
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	12.0	0.9312
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	15.9	0.9201
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	19.7	0.9313
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	20.0	0.9262
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	20.1	0.9240
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	23.8	0.9298
AT3G07440			unknown protein		Lus10020404 [exp]	25.1	0.9213

Compare expression of checked genes

Lus10014834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.