Plant FIBer expression Database

Lus10014835 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17690 676 / 0 NOF1 nucleolar factor 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009882
[exp]
1217 / 0 AT1G17690 683 / 0.0 nucleolar factor 1, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G010000
[exp]
760 / 0 AT1G17690 766 / 0.0 nucleolar factor 1, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06862 UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
Representative CDS sequence
>Lus10014835 pacid=23150186 polypeptide=Lus10014835 locus=Lus10014835.g ID=Lus10014835.BGIv1.0 annot-version=v1.0
ATGGCAGGGGTTAAGAGAAAGAAGTCGGCAGGAGACAAAAGGATGAAAAAGGGAAAATCAAATAAGAAGTCCACTAAATCCGATTCCCACCCCATCTCCA
ACAAAGAGTATTGGAGTGATGATGATCTGACTGAAATTGTTGAATCTGGCAATGATTTGGAGTCTGTTGCAGTCGATGAAGAGCGTAACTTGGGTGTGGA
TGCCTTCTCTGCTGTTGAGGATTCTTTGCAGAAAAGCTCTTTCCATTTACATTTGGAAAATGACTTGTCTCAAGAAGAGATTGAGAATCTTTCCAAAAAG
AAGTGGAAGTATAGCTGGGAAGTGCCTTATTTTGAGTCATCAAATTACAAGTGGGCGGGGACAGGAGAGTGCTGCTTAAAGACACAGGAAATGGACACTT
CTACTATTGGTGTCAAGCGAAGTTTGTATAAGCATTGGCTGGATGTGTGCAAGGTGTCAGGAGATTTTGCTGCATCCAAACAGAGCGCTTTCTTCAGTAT
CTTTAACAGCTACAAGGATGTATTGCATTGTAACAAGAAACCTTTCTATCTCAAAGGGCATGGAGAAGACTCTTGCATTATGGACGCTTACCTAATGCAT
TCTTTGAATCACGTTTTTAAAAGCAAAGATCTAGTAAAAAAGAACGATACCAAAGTTGCTAAGCTTCAGGAGTCTTCTGAAAGTGAGTTGCTTATTGATG
ATGCTGTTCGTGATCGAGGGTTTACTCGACCGAAGGTTTTGATCATCTTGCCAATTAGACACATAGCACTTCGTGTTGTGAGGAGGCTAATACAATTGAC
GCCTCAAGCTTACAAGGCAAATGTCGAGTATATGGACCGATTTCTTGAAAAGTTTGGATCTCAAGATGACCAAGTTCCTCTTGATGAGGAAGAGGCAAAG
CTCATCGGACAATTGATGTCTAAGAAGCCGCATAAGCCATCTGACTATGAAGCACTCTTCGGTGGGAATTCTGATGATGACTTTATGGTTGGAATTAAGT
TTACTAGGAAAAGCATAAAGTTATTTAGTGACTTTTATTCATCAGACGTCATTGTTGCTTCTCCTCTTGCTCTCTGGGCGAAAATCGAAAAAGTCCGGGC
CAAAACTGAAGAAGATTTTGATTATCTATCGGCTATTGAGGTTGCTATTATTGATCATGCCGATGTAATAGCAATGCAAAACTGGGACCATCTGGCAGTA
GTTCTTGAACAATGTAACCGTATGCCGTCAAAGCAACACGGGACTGACATAATGCGAATCAGGAAGTGGCATCTGGATGGACAAGCTAAATTTTATCGCC
AAACGATCATGCTAGGTCACTATGTAAACCCAGATATCAATGCTTCATTCAGTAACTTGTGCTGCAATTATCAAGGAAAGATCAAGTCGGTATGCGGGAC
TCGTAAAGGTGTCCTTCCTAAAGTCCTACCAGAACTAAGACAGATTTATGAGCGCTTTGTTGTAGACTCAGTTGCAGATGCTGATGATGCCCGCCTTGAT
CATTTTATTAAAAAGGTAGCTCTAGAAGGAGTGTTCCCGAAGATCAAAGATTCCGAAGAGGGTGGGATCATGATATTTATCAGTTCGTATTTCGAGTTTG
TTAGAGTCCGCAACTTCCTGTTTTCTCAGAAGGCATCATTCTGCCTTCTTGGAGATAATACCCAGCCTAAAGATGTGAGTCGTGCTCGGAATTTCTTTAT
CCAAGGAAAGCATAAGATCGTACTTTACACAGAGAGGCTTCTGTTCTTCCGCAGATACAAGATCCGCGGCGTAAAAGAGTTGATCATGTATTCTCTTCCC
GAAAGGAAGGAGTTCTATCCCGAGGTACTTAACATGCTTGAAGGGGCCAATGATATGTCCTGCACGGTGCTCTTTTCCAAGTTGGACTGGCTGCGGCTGG
AGAGGATTGTAGGAACTACTTCCGCAAAACGGATGGTTACATCGGAGAAGCCCGTCTTTGTATTGTGCTGA
AA sequence
>Lus10014835 pacid=23150186 polypeptide=Lus10014835 locus=Lus10014835.g ID=Lus10014835.BGIv1.0 annot-version=v1.0
MAGVKRKKSAGDKRMKKGKSNKKSTKSDSHPISNKEYWSDDDLTEIVESGNDLESVAVDEERNLGVDAFSAVEDSLQKSSFHLHLENDLSQEEIENLSKK
KWKYSWEVPYFESSNYKWAGTGECCLKTQEMDTSTIGVKRSLYKHWLDVCKVSGDFAASKQSAFFSIFNSYKDVLHCNKKPFYLKGHGEDSCIMDAYLMH
SLNHVFKSKDLVKKNDTKVAKLQESSESELLIDDAVRDRGFTRPKVLIILPIRHIALRVVRRLIQLTPQAYKANVEYMDRFLEKFGSQDDQVPLDEEEAK
LIGQLMSKKPHKPSDYEALFGGNSDDDFMVGIKFTRKSIKLFSDFYSSDVIVASPLALWAKIEKVRAKTEEDFDYLSAIEVAIIDHADVIAMQNWDHLAV
VLEQCNRMPSKQHGTDIMRIRKWHLDGQAKFYRQTIMLGHYVNPDINASFSNLCCNYQGKIKSVCGTRKGVLPKVLPELRQIYERFVVDSVADADDARLD
HFIKKVALEGVFPKIKDSEEGGIMIFISSYFEFVRVRNFLFSQKASFCLLGDNTQPKDVSRARNFFIQGKHKIVLYTERLLFFRRYKIRGVKELIMYSLP
ERKEFYPEVLNMLEGANDMSCTVLFSKLDWLRLERIVGTTSAKRMVTSEKPVFVLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Lus10014835
[exp]
0 1
AT1G18450 ATARP4 actin-related protein 4 (.1) Lus10042980
[exp]
1.7 0.9233
AT4G20910 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, d... Lus10023257
[exp]
2.4 0.9024
AT5G67610 Uncharacterized conserved prot... Lus10019263
[exp]
2.8 0.9075
AT1G18450 ATARP4 actin-related protein 4 (.1) Lus10032484
[exp]
3.9 0.9011
AT4G32910 unknown protein Lus10038723
[exp]
8.8 0.8994
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Lus10022044
[exp]
14.4 0.9015
AT1G28530 unknown protein Lus10025436
[exp]
15.8 0.8260
AT4G07410 PCN POPCORN, Transducin family pro... Lus10005385
[exp]
16.3 0.8977
AT4G28200 unknown protein Lus10003351
[exp]
18.5 0.8963
AT3G43920 DCL3, ATDCL3 dicer-like 3 (.1.2.3) Lus10019757
[exp]
19.4 0.8958

Lus10014835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.