Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39940 805 / 0 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G03190 296 / 2e-92 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT5G49980 281 / 1e-86 AFB5 auxin F-box protein 5 (.1) AT4G24390 280 / 5e-86 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT1G12820 279 / 5e-86 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 264 / 3e-80 AFB2 auxin signaling F-box 2 (.1) AT3G62980 261 / 4e-79 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G15475 68 / 1e-11 F-box/RNI-like superfamily protein (.1) AT2G25490 54 / 4e-07 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 51 / 2e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028265 [exp] 996 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10040224 [exp] 987 / 0 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10009883 [exp] 680 / 0 AT2G39940 480 / 4e-165 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Lus10020086 [exp] 279 / 5e-86 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 277 / 2e-85 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 273 / 2e-82 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 261 / 4e-79 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 259 / 2e-78 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011262 [exp] 253 / 4e-76 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064400 [exp] 876 / 0 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 874 / 0 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.005G159300 [exp] 291 / 3e-90 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.004G033900 [exp] 288 / 2e-89 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.002G102700 [exp] 288 / 8e-89 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.011G042400 [exp] 282 / 4e-87 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.017G061600 [exp] 266 / 3e-81 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 263 / 7e-80 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.002G207800 [exp] 255 / 6e-77 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 253 / 4e-76 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014836 pacid=23150162 polypeptide=Lus10014836 locus=Lus10014836.g ID=Lus10014836.BGIv1.0 annot-version=v1.0 ATGGAAGAGAATCGGAACATCGGGAGACTGGCCAGAATGAACAGCCCGGGGATGTCAGATACTGTAATTGGTTGTGTGATGCCATACATCGACGACCCAC GGGACAGGGACGCCGTGTCTTTGGTCTGCCGGAGCTGGTACGAATTGGATGCTTTGACCCGGAAGCACGTCACTATTGCCCTTTGTTACACCACCAGCCC AAATCGGCTCCGGCGCCGCTTCAATCACCTCGAGTCCCTCAAGCTCAAAGGGAAACCCCGGGCCGCCATGTTCAATCTCATTCCCGAGGATTGGGGTGGC TTCGTCACTCCGTGGGTCAACGAGATTGTCGAGTCTTTCAATTGCTTGAGGTCGGTCCACTTCAGGCGGATGATTGTCACGGATTCTGATTTGGATCTCC TTGCCACGTCTCGTGGGACAGCCTTGCATCACTTGAAGCTCGACAAGTGTTCTGGTTTCTCCACCGATGGCCTTCTTCAGGTTGCACGATTGTGCAGACA ATTGAGAACGTTGTTTTTGGAAGAGAGCATTATCTTGGAGAAAGATGGTGACTGGCTCCATGAGCTTGCTGCACACAATAGTGTTCTTGAGACTCTGAAC TTCTACATGATAGACCTTGCAAAACTGAAGGTTGAAGACTTTGACCTCATAGCCAAAAACTGCAAATCCTTGATCTCCGTAAAGATTAATGATTTTGAAA TCCTAGATCTTATAGACTTCTTCCTAGTTGCTTCTTCCTTAGAAGAGTTTTGTGGTGGCTCATTTCCTGATCTACCTGAAGGCGATGTACCAGACAGGTA CTCTGCTGTAACATTTCCCCCCAAACTCTGTCGTTTGGGTCTAACCTACATGGGGAACAAAGAAATGCCCATAATGTTTCCATTTGCACCAACTCTCAAG AGGCTGGATCTCCTCTACGCATTGCTTGACACGGAGGATCATTGTCTTTTGATAGAGAGGTGCACCAATTTAGAAATCCTTGAGACGAGAAACGTGATTG GAGATAGAGGGTTGGAAGTTCTTGCAAGGAGTTGCAAGAGACTGAAGAGGCTCAGGATCGAGCGTGGTGCAGATGACCAAGGACCAGAGGACGAAGAAGG TATTGTTTCACAGAGAGGAATCATTGATCTTGCCCAGGGCTGCCTAGAACTTGAGTACTTGGCTGTATATGTTTCTGACATCACAAATGAAGCTCTCTGG TATATTGGCACCCACTCAAAGAACCTCAATGATTTTCGCTTGGTGCTTCTGGACAGAGAAGAGAAAATAGAAGATCTGCCCCTAGACAATGGAGTTCGGG CACTATTGAGCGGCTGTGACAAACTCCGGAGGTTCGCTCTATATCTGAGGCAAGGGGGGCTGACTGATCTGGGTATGAGTTATATAGGGCAATATAGTCA GAACATTAGGTGGATGCTTCTGGGTTATGTTGGGAATAGTGACGAGGGTCTTCGAGCTCTCTCAAGAGGATGCCCAAACCTGCAGAAACTTGAAATGAGG GGATGCTGCTTCAGCGAGAGTGCACTGGCTCGTGCTGTGCTGCATCTGACTTCTCTAAGGTACTTGTGGGTGCAGGGATACCGACCATCACAGCTTGGGC GGGACCTCCTAGCAATGGCTCGCCCTTTTTGGAACATCGAGCTTATTCCTCCGAGGAAAGTGTTGGTGCCTAATGAAGGTGGAGAGATAGTGGTTGAGCA TCCTGCACAAATACTTGCATACTACTCTCTTGCTGGACCAAGAACAGATTTTCCAGATACTGTAATCCCCTTGGACCCGCTAAGCTTTTAA
AA sequence Show only first row Show all	>Lus10014836 pacid=23150162 polypeptide=Lus10014836 locus=Lus10014836.g ID=Lus10014836.BGIv1.0 annot-version=v1.0 MEENRNIGRLARMNSPGMSDTVIGCVMPYIDDPRDRDAVSLVCRSWYELDALTRKHVTIALCYTTSPNRLRRRFNHLESLKLKGKPRAAMFNLIPEDWGG FVTPWVNEIVESFNCLRSVHFRRMIVTDSDLDLLATSRGTALHHLKLDKCSGFSTDGLLQVARLCRQLRTLFLEESIILEKDGDWLHELAAHNSVLETLN FYMIDLAKLKVEDFDLIAKNCKSLISVKINDFEILDLIDFFLVASSLEEFCGGSFPDLPEGDVPDRYSAVTFPPKLCRLGLTYMGNKEMPIMFPFAPTLK RLDLLYALLDTEDHCLLIERCTNLEILETRNVIGDRGLEVLARSCKRLKRLRIERGADDQGPEDEEGIVSQRGIIDLAQGCLELEYLAVYVSDITNEALW YIGTHSKNLNDFRLVLLDREEKIEDLPLDNGVRALLSGCDKLRRFALYLRQGGLTDLGMSYIGQYSQNIRWMLLGYVGNSDEGLRALSRGCPNLQKLEMR GCCFSESALARAVLHLTSLRYLWVQGYRPSQLGRDLLAMARPFWNIELIPPRKVLVPNEGGEIVVEHPAQILAYYSLAGPRTDFPDTVIPLDPLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	0	1
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	2.0	0.8157
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	2.6	0.8228
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10027817 [exp]	3.5	0.8019
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	6.0	0.8156
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	7.0	0.7691
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	8.4	0.7373
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	10.2	0.7621
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10028486 [exp]	10.7	0.7743
AT4G33480			unknown protein		Lus10003851 [exp]	12.4	0.7568
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	13.7	0.7305

Compare expression of checked genes

Lus10014836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.