Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39960 271 / 1e-92 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) AT4G04200 235 / 2e-78 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009885 [exp] 399 / 9e-143 AT2G39960 248 / 5e-84 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G064700 [exp] 272 / 2e-93 AT2G39960 312 / 5e-110 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1) Potri.010G192700 [exp] 266 / 5e-91 AT2G39960 321 / 1e-113 Microsomal signal peptidase 25 kDa subunit (SPC25) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06703 [flax] [poplar] SPC25 Microsomal signal peptidase 25 kDa subunit (SPC25)
Representative CDS sequence Show only first row Show all	>Lus10014838 pacid=23150147 polypeptide=Lus10014838 locus=Lus10014838.g ID=Lus10014838.BGIv1.0 annot-version=v1.0 ATGGAAACCAAGTCAGAGCCGACGCCCAACAAGAACCAGAAGAAGGCCAATCTTCTCGATCACCACTCCATCAAGCACATTCTCGACGAGTCCGTCTCCG AAATCGTTACGAGTCGAGGATACACTGAAGATGTGAGGATGAGCAATGTCAGGCTGTTTCTGGGGACTGTTATTATCGCCGTCGCTCTTGTTGCTCAGTT TTACAAGAAGAAGTTCCCCGAGAACAGAGACTTTTTGATCGGTTGCATCTGGGTCAATATGTGTTTGAGGTACGAGTCCTGTGTTTCTAGTGATGGTGGA AAATCTGAATACTGTTTGATCCTTGACTATGGCAAGTATGTATTCCTCAATGTAGTGCTGCAGCTTATCATATTTGTGAAGGAAAAGGACGCCATCTTGT TCACTTACCCTCCTAAGGGATCTTACACAAGCACTGGGTTGATGATCTCTTCCAAATTGCCAAGATTTGCAGAAGACTACACGCTCACAATAGCAAGTGC AGATCCAAAATCCATTTCCGCAGGGAAGACTGTGAACCTCACCAGAAGTGTTTCGAAATGGCATGCGACTCTTTCTCTCTTTGCTCCTTATAGCTTACGA TCATTTGGGGAAACACAAATATCTGAATGTCAGTTGTGGCCCGTAATTTGCAGGTTCACCAAAGATGGAGTATTAGTAGAGGGACTATTCTGGAAGGATG TGAACTCACTAATCGATGAGTACGCCGGGGATGGGAAGAAGAGCAAGTGA
AA sequence Show only first row Show all	>Lus10014838 pacid=23150147 polypeptide=Lus10014838 locus=Lus10014838.g ID=Lus10014838.BGIv1.0 annot-version=v1.0 METKSEPTPNKNQKKANLLDHHSIKHILDESVSEIVTSRGYTEDVRMSNVRLFLGTVIIAVALVAQFYKKKFPENRDFLIGCIWVNMCLRYESCVSSDGG KSEYCLILDYGKYVFLNVVLQLIIFVKEKDAILFTYPPKGSYTSTGLMISSKLPRFAEDYTLTIASADPKSISAGKTVNLTRSVSKWHATLSLFAPYSLR SFGETQISECQLWPVICRFTKDGVLVEGLFWKDVNSLIDEYAGDGKKSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	0	1
AT1G47820			unknown protein		Lus10035088 [exp]	1.4	0.8740
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	2.2	0.7992
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10040303 [exp]	4.2	0.7558
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	6.9	0.7644
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Lus10036884 [exp]	7.7	0.7967
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10011695 [exp]	8.9	0.7564
AT5G23395		MIA40	mitochondrial intermembrane sp...		Lus10001795 [exp]	8.9	0.7814
AT3G18510			unknown protein		Lus10032475 [exp]	9.9	0.8071
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	12.0	0.8283
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	12.7	0.7789

Compare expression of checked genes

Lus10014838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.