Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39970 436 / 2e-154 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT5G66380 129 / 6e-35 ATFOLT1 folate transporter 1 (.1) AT2G47490 103 / 3e-25 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 103 / 5e-25 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT3G05290 97 / 8e-23 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT5G27520 94 / 8e-22 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT1G14560 73 / 2e-14 Mitochondrial substrate carrier family protein (.1) AT4G26180 69 / 5e-13 Mitochondrial substrate carrier family protein (.1) AT4G01100 69 / 6e-13 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G32400 68 / 1e-12 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009886 [exp] 564 / 0 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10034104 [exp] 105 / 1e-25 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10028339 [exp] 96 / 1e-22 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10034055 [exp] 94 / 2e-21 AT3G05290 427 / 3e-151 peroxisomal adenine nucleotide carrier 1 (.1) Lus10001463 [exp] 93 / 3e-21 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10031510 [exp] 92 / 7e-21 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10003041 [exp] 89 / 1e-20 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10015188 [exp] 91 / 2e-20 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10010517 [exp] 87 / 4e-19 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G192600 [exp] 427 / 1e-150 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.008G064800 [exp] 394 / 2e-137 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 366 / 2e-126 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 125 / 2e-33 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 116 / 2e-29 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 115 / 3e-29 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 109 / 3e-27 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 100 / 5e-24 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G092100 [exp] 98 / 3e-23 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.013G023200 [exp] 92 / 6e-21 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10014839 pacid=23150238 polypeptide=Lus10014839 locus=Lus10014839.g ID=Lus10014839.BGIv1.0 annot-version=v1.0 ATGTCAGACGCTCTGATCAATGGTCTCGCTGGAGCTGGCGGTGGAATCATCGCTCAGCTCCTCACTTATCCTCTTCAAACTGTGAACACTCGGCAGCAAA CGGAGCGTGGCGTTCCTAAGGAACAGAAACAGACGCTTGGTACCGTACATCAAATGTTGCAGGTTGTGAGGCATGAAGGATGGGGCCGGTTGTATGGAGG ATTAGCTCCGTCACTAGTAGGAACTGCTGCTTCTCAGGGAGTTTATTATTATTTCTATCAAATATTTAGGGACAAAGCTCAAGCCATGGCACTTGCACGT AAAAAGAAAGGGTTTGGTGATGGATCGATTGGGATGTTTTCATCACTTGTTGTGGCTGCTTTAGCTGGGTCTGTAAATGTGTTGATGACAAATCCTATCT GGGTGATTGTTACTCGAATGCAGACTCATAAAAAGGCTGCAAAGAAATCAGAACCTAGTAGCTCACCATCAGATGCTTCTGATAAGCTTATAGCTGTACC GCAGCCACCTCCATTTGGGACGTCTGATGCGATTCAAGAAGTCTTTGGTGAGGGTGGAATTCTAGGTTTCTGGAGAGGTGTATTGCCAACACTGATCATG GTAAGTAATCCCGCAATGCAATTCATGTTATATGAAACCCTTCTTAAGAAGTTGAAACAACGACGGGCACTGCTTAGGAAAGATGTAAATGACATCACTG CTTTGGAGATATTCCTTCTCGGGGCGTTGGCGAAACTTGGGGCCACTGTCGTAACATATCCGCTTCTAGTCGTTAAGTCACGGCTGCAAGCTAAGCAAGT AACTACAGGAGATAAAAGGCATCACTATAAAGGTACATCGGATGCTATACTGAAGATGATCCGATACGAAGGTTTCCATGGGTTTTACAAAGGTATGAGC ACGAAGATCTGTCAAAGTGTTCTTGCGGCTGCTGTGTTGTTCATGGTGAAGGAAGAACTGGTGAAGGGTGTTCGCCTCTTACTGACTGGTAGTAAAGCGG TGAAATCAAAGCCTCCCTAA
AA sequence Show only first row Show all	>Lus10014839 pacid=23150238 polypeptide=Lus10014839 locus=Lus10014839.g ID=Lus10014839.BGIv1.0 annot-version=v1.0 MSDALINGLAGAGGGIIAQLLTYPLQTVNTRQQTERGVPKEQKQTLGTVHQMLQVVRHEGWGRLYGGLAPSLVGTAASQGVYYYFYQIFRDKAQAMALAR KKKGFGDGSIGMFSSLVVAALAGSVNVLMTNPIWVIVTRMQTHKKAAKKSEPSSSPSDASDKLIAVPQPPPFGTSDAIQEVFGEGGILGFWRGVLPTLIM VSNPAMQFMLYETLLKKLKQRRALLRKDVNDITALEIFLLGALAKLGATVVTYPLLVVKSRLQAKQVTTGDKRHHYKGTSDAILKMIRYEGFHGFYKGMS TKICQSVLAAAVLFMVKEELVKGVRLLLTGSKAVKSKPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	0	1
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	1.0	0.9152
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Lus10038957 [exp]	2.8	0.8805
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	3.5	0.8852
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	8.7	0.8822
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	8.8	0.8564
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	11.7	0.8709
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	12.0	0.8783
AT1G73350			unknown protein		Lus10031897 [exp]	16.4	0.8733
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	18.2	0.8658
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	20.2	0.8615

Compare expression of checked genes

Lus10014839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.