Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45960 452 / 7e-162 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT4G00430 449 / 1e-160 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT3G61430 429 / 1e-152 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT1G01620 429 / 1e-152 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 418 / 1e-148 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT4G35100 363 / 7e-127 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G37180 361 / 6e-126 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G16850 360 / 1e-125 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37170 358 / 5e-125 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 357 / 3e-124 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028273 [exp] 477 / 8e-172 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10032283 [exp] 446 / 2e-159 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10024651 [exp] 446 / 2e-159 AT2G45960 526 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10035483 [exp] 439 / 2e-156 AT2G45960 520 / 0.0 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Lus10027467 [exp] 362 / 1e-126 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023184 [exp] 362 / 2e-126 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10039222 [exp] 362 / 2e-126 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023515 [exp] 359 / 4e-125 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10014978 [exp] 359 / 4e-125 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191900 [exp] 468 / 2e-168 AT4G00430 509 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.003G128600 [exp] 464 / 7e-167 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.008G065600 [exp] 461 / 1e-165 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.016G113300 [exp] 455 / 4e-163 AT4G00430 524 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G098100 [exp] 444 / 1e-158 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Potri.006G128200 [exp] 369 / 6e-129 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 367 / 2e-128 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 365 / 8e-128 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.010G222700 [exp] 361 / 6e-126 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 356 / 3e-124 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10014840 pacid=23150227 polypeptide=Lus10014840 locus=Lus10014840.g ID=Lus10014840.BGIv1.0 annot-version=v1.0 ATGGGGCGTCGTGAAGAACAAGAAGAAGAAGAAGAAGACGACGTGAGAGTAGGAGCCGATAAGTACAACAACGAGAAGCAGCCCATCGGAACATCTTCCC AAACCCACCACCACGACAAGTCATACGTCCAGCCCCCCGGCGCCCCCTTCTTCGAACCCGCCGAGCTCACTTCATGGTCCTTCTACCGAGCCGGAATCGC CGAGTTCATGGCCACTTTCCTCTTCCTTTACATCAGCGTCCTCACCGTCATGGGCGTCGCTAAAACCGGACCCACCACCACCACCAACAACAACACGTGC TCCACGGTCGGAACTCAAGGCATCGCGTGGGCATTCGGGGGAATGATATTCGCCCTCGTTTACAGCACGGCCGGGATTTCTGGCGGACACATAAACCCGG CTGTGACGTTCGGGCTGTTCATCGGGAGGAGGCTGTCACTTACGAGGGCTGTGTACTACATTGTGATGCAGTGCCTGGGAGCCATCTGCGGCGCAGGGGT TGTCAAAGGGTTGCAAGGGAAGGAGGAATTTGCCATGTTGGGAGGTGGGGCCAACTTCGTCAACAATGGCTATACTAAAGGAAGTGGGCTTGGTGCTGAA ATCGTCGGCACTTTTGTTCTTGTTTATACCGTCTTCTCCGCTACCGATGCCAAACGTAACGCCAGAGACTCCCACATCCCTATTTTGGCTCCGCTGCCAA TTGGGTTCGCAGTGTTTTTGGTCCACTTGGCAACGATACCAGTCACCGGAACCGGAATCAACCCTGCTCGGAGCCTCGGGGCAGCCATCATCTTCAACCA CCACAGGGGCTGGGAAGATCATTGGATCTTCTGGGTTGGGCCATTCATCGGGGCAGCTCTGGCAGCACTGTACCACCAGGTGGTGATCAGGGCCATTCCA TTCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10014840 pacid=23150227 polypeptide=Lus10014840 locus=Lus10014840.g ID=Lus10014840.BGIv1.0 annot-version=v1.0 MGRREEQEEEEEDDVRVGADKYNNEKQPIGTSSQTHHHDKSYVQPPGAPFFEPAELTSWSFYRAGIAEFMATFLFLYISVLTVMGVAKTGPTTTTNNNTC STVGTQGIAWAFGGMIFALVYSTAGISGGHINPAVTFGLFIGRRLSLTRAVYYIVMQCLGAICGAGVVKGLQGKEEFAMLGGGANFVNNGYTKGSGLGAE IVGTFVLVYTVFSATDAKRNARDSHIPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAAIIFNHHRGWEDHWIFWVGPFIGAALAALYHQVVIRAIP FKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	0	1
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	2.0	0.8735
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	3.5	0.8397
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	8.0	0.8425
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10019599 [exp]	8.3	0.7444
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	8.5	0.8324
					Lus10015426 [exp]	11.0	0.8203
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	13.3	0.8188
AT3G62060			Pectinacetylesterase family pr...		Lus10009966 [exp]	15.4	0.7980
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	15.9	0.8069
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	16.4	0.8096

Compare expression of checked genes

Lus10014840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.