Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05730 833 / 0 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT2G29690 788 / 0 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT3G55870 705 / 0 ADC synthase superfamily protein (.1) AT2G28880 174 / 9e-46 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT1G18870 59 / 5e-09 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009888 [exp] 993 / 0 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 828 / 0 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 824 / 0 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10036525 [exp] 171 / 7e-45 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 166 / 4e-43 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10023622 [exp] 60 / 4e-09 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190600 [exp] 875 / 0 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.009G044300 [exp] 795 / 0 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.008G066600 [exp] 207 / 2e-64 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.001G250300 [exp] 166 / 4e-48 AT2G29690 187 / 2e-56 anthranilate synthase 2 (.1) Potri.010G221500 [exp] 170 / 1e-44 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.012G070000 [exp] 53 / 6e-07 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme PF04715 [flax] [poplar] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Lus10014842 pacid=23150234 polypeptide=Lus10014842 locus=Lus10014842.g ID=Lus10014842.BGIv1.0 annot-version=v1.0 ATGCAGAGCCTCGGAGTAGTATCTCATCACCATCCGTCGCCGTTAAGCAGCGGCCGCGGGCTGATTCCTCCGTCGACCTACGGAGAGACATGCATTTCAT CCAGGATCAGGTCGAGGTGGGCGTCTTCGTCTTCCTCCGTCCGACGAATCAAATGCGTTGCGACCATGAGTAGCTGTAGAACTTCGATCGTTGAAGAGCC AGCAAAGTTCATGGAAGCTGCTAAACAGGGGAATTTGGTCCCTCTTCAGTGTCAGATCTTTTCGGACCAGCTCACTCCTGTAACTGCTTACAGATGTTTG GTGAAAGAAGATGACAGAGAAGCACCTAGCTTTCTCTTTGAGGCTGTGGAACCAGGTTTCCGGGTTTCAAGCGTTGGGAGGTACAGCGTTATAGGGGCTC AACCTAGCGTTGAAATCGTCGCAAAAGAAAATAGAGTTACCATAATGGACCATGAACGTTGCGAGATGACTAAGGAAATTTCTGAAGATCCGATGACCAT TCCGAGAAGCATCTCAGAAGGTTGGAAACCGCAATTGATGGGTGACCTTCCGGCTGCCTTTTGTGGTGGCTGGGTTGGTTTCTTTTCATATGATACTGTT AGATATGTGGAGAAGAAGAAACTACCGTTCTCAAATGCTCCAGAGGATGATCTGAACCTTCCTGATATACATCTGGCTCTCTATGACGATGTAATTGTCT TTGATCACGTTGACAAGAAATTGTACATAATCCACTGGGTCCATATAGATCAATACTCATCTGTTGAAAGTGCTTATACCGATGGGATGAAACGTCTGGA AACACTCGTGGCCAGAGTGCAAGATATTGACCCTCCGAAGTTGTCAGCCGGGTTTGTAAATGTTCAGACAAGCAAATTTGGCCCCTCGTTAAAGAAGTCG AGCATGACTAGCCAAGAGTACACGAGTGCTGTACTGAAAGCTAAAGAGCACATCCTCGCTGGGGATATTTTCCAGGTCGTTTTAAGCCAACGTTTTGAAC GGCGAACATTTGCAGATCCATTTGAGGTCTACCGAGCTTTGAGAATCGTGAATCCCAGTCCTTATATGGCATACTTGCAGGCACGAGGCTGTATCTTAGT TGCCTCCAGCCCAGAAATTCTCACCCGGGTCAAGCAGAACACGGTGGTGAATCGGCCACTTGCAGGTACCATCAAAAGAGGGAAAACAGCAGAGGAAGAT GAAATCCTGGCAAACCAGCTCTTGAGCGACCCTAAGCAATGCGCGGAACACATTATGCTCGTCGACTTAGGAAGAAATGACGTGGGGAAGGTTTCCAAAA GCGGCTCAGTCAAGGTGGAGAAACTCATGGACATCGAGAGATATTCCCATGTCATGCACATTAGTTCAACGGTCACGGGAGAACTGCAGGAGAATGTTTC ATGCTGGGACGCACTCAGGGCAGCACTTCCAGTGGGAACTGTGAGTGGAGCCCCTAAAGTGAGAGCAATGGAGCTAATAGACAGCCTGGAGGTGAAGAAG CGAGGCCCATACAGCGGAGGGTTCGGAGGGATTTCATTCATGGGAGACATGGACGTGGCACTCGCTCTTAGGACTATGGTCTTCCCCACCGGCACAAGAT ACGACACCATGTACTCTTACGGAGACGCAGCACAGCGTCGCGAGTGGGTGGCATACCTACAGGCCGGTGCAGGGATTGTAGCTGACAGTGTGCCTGAGGA CGAGCATCTGGAGTGTCAGAACAAAGCTGCCGGTCTAGCTCGGGCTATCGACCTGGCCGAGTCGGCTTTCCTACCTAACACCGAGCCATGA
AA sequence Show only first row Show all	>Lus10014842 pacid=23150234 polypeptide=Lus10014842 locus=Lus10014842.g ID=Lus10014842.BGIv1.0 annot-version=v1.0 MQSLGVVSHHHPSPLSSGRGLIPPSTYGETCISSRIRSRWASSSSSVRRIKCVATMSSCRTSIVEEPAKFMEAAKQGNLVPLQCQIFSDQLTPVTAYRCL VKEDDREAPSFLFEAVEPGFRVSSVGRYSVIGAQPSVEIVAKENRVTIMDHERCEMTKEISEDPMTIPRSISEGWKPQLMGDLPAAFCGGWVGFFSYDTV RYVEKKKLPFSNAPEDDLNLPDIHLALYDDVIVFDHVDKKLYIIHWVHIDQYSSVESAYTDGMKRLETLVARVQDIDPPKLSAGFVNVQTSKFGPSLKKS SMTSQEYTSAVLKAKEHILAGDIFQVVLSQRFERRTFADPFEVYRALRIVNPSPYMAYLQARGCILVASSPEILTRVKQNTVVNRPLAGTIKRGKTAEED EILANQLLSDPKQCAEHIMLVDLGRNDVGKVSKSGSVKVEKLMDIERYSHVMHISSTVTGELQENVSCWDALRAALPVGTVSGAPKVRAMELIDSLEVKK RGPYSGGFGGISFMGDMDVALALRTMVFPTGTRYDTMYSYGDAAQRREWVAYLQAGAGIVADSVPEDEHLECQNKAAGLARAIDLAESAFLPNTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	0	1
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10026270 [exp]	3.9	0.9042
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028224 [exp]	10.4	0.8930
AT5G09995			unknown protein		Lus10016816 [exp]	10.6	0.8775
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	14.4	0.8987
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	14.5	0.9007
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	15.2	0.8876
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	16.8	0.8855
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10017795 [exp]	19.1	0.8438
AT1G50000			methyltransferases (.1.2)		Lus10037251 [exp]	19.4	0.8239
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	23.3	0.8569

Compare expression of checked genes

Lus10014842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.