Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05610 352 / 2e-124 Alfin AL1 alfin-like 1 (.1.2) AT3G11200 338 / 2e-118 Alfin AL2 alfin-like 2 (.1.2) AT3G42790 272 / 2e-92 Alfin AL3 alfin-like 3 (.1) AT5G20510 268 / 1e-90 Alfin AL5 alfin-like 5 (.1) AT2G02470 256 / 4e-86 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 253 / 7e-85 Alfin AL7 alfin-like 7 (.1) AT5G26210 223 / 4e-73 Alfin AL4 alfin-like 4 (.1) AT2G40770 44 / 7e-05 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) AT5G35210 40 / 0.001 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009889 [exp] 448 / 3e-162 AT5G05610 358 / 2e-126 alfin-like 1 (.1.2) Lus10028280 [exp] 376 / 9e-134 AT5G05610 333 / 7e-117 alfin-like 1 (.1.2) Lus10040207 [exp] 367 / 3e-130 AT5G05610 309 / 2e-107 alfin-like 1 (.1.2) Lus10005035 [exp] 336 / 9e-118 AT5G05610 325 / 2e-113 alfin-like 1 (.1.2) Lus10027805 [exp] 335 / 1e-116 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2) Lus10026268 [exp] 256 / 3e-86 AT2G02470 382 / 2e-135 alfin-like 6 (.1.2) Lus10026269 [exp] 256 / 3e-86 AT2G02470 380 / 7e-135 alfin-like 6 (.1.2) Lus10015637 [exp] 254 / 2e-85 AT5G20510 353 / 4e-124 alfin-like 5 (.1) Lus10042402 [exp] 228 / 2e-75 AT2G02470 357 / 4e-126 alfin-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069200 [exp] 382 / 3e-136 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2) Potri.010G188100 [exp] 373 / 1e-132 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.016G116900 [exp] 352 / 2e-124 AT5G05610 305 / 1e-105 alfin-like 1 (.1.2) Potri.006G100900 [exp] 346 / 6e-122 AT5G05610 311 / 6e-108 alfin-like 1 (.1.2) Potri.018G050200 [exp] 280 / 2e-95 AT5G20510 343 / 4e-120 alfin-like 5 (.1) Potri.006G223500 [exp] 269 / 2e-91 AT5G20510 327 / 5e-114 alfin-like 5 (.1) Potri.006G145300 [exp] 261 / 4e-88 AT5G20510 311 / 1e-107 alfin-like 5 (.1) Potri.003G044700 [exp] 258 / 8e-87 AT2G02470 363 / 3e-128 alfin-like 6 (.1.2) Potri.004G230500 [exp] 255 / 7e-86 AT2G02470 361 / 3e-127 alfin-like 6 (.1.2) Potri.009G121000 [exp] 41 / 0.0003 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12165 [flax] [poplar] Alfin Alfin
Representative CDS sequence Show only first row Show all	>Lus10014843 pacid=23150172 polypeptide=Lus10014843 locus=Lus10014843.g ID=Lus10014843.BGIv1.0 annot-version=v1.0 ATGGCTTCCATATCCTCTAGCCCACGCACTGTTGAAGAGATCTTTAAGGACTACACCGCCCGCCGCTCCGCCCTCCTCCGAGCTCTCACTTTTGATGTGG ATGATTTCTACTCCCAATGCGATCCAGAAAAGGAGAACTTGTGCTTATATGGACACCCAAATGAGTCTTGGGAGGTTACACTTCCAGCAGAGGAAGTTCC ACCGGAGCTACCTGAGCCAGCATTAGGCATTAATTTTGCAAGAGATGGGATGCAGCGCAAAGATTGGCTCTCTCTAGTTGCAGTGCACAGTGACTGTTGG CTGCTGTCTGTGGCATTTTACTTTGGTGCCCGACTTAATCGCAATGAAAGGAAGCGCCTTTTCAGTATGACAAATGATCTGCCGAGCCTCTTTGAAGTTG TAACCGGAAGGAAGCCTGTGAAAGACAAACCCAGTGTGGATAGTGGAAGTAAATCCAGGAACAGCACAAAGAGAACAATAGATGGACATTCAAAGAATAA CTCAAAGTTGCTTGATGAGAATTATGGAGAGGATGAAGATGAGCATGGGGAGACCATCTGTGGTAGTTGCGGAGGACTCTACAGCGCTGACGAATTTTGG ATTGGTTGTGATATTTGCGAACGGTGGTATCACGGGAAATGTGTGAAGATCACGCCAGCTAAGGCAGACAGCATTAAGCATTACAAGTGCCCTTCCTGCT GCACTAAGAAGGGAAGGCCGTAG
AA sequence Show only first row Show all	>Lus10014843 pacid=23150172 polypeptide=Lus10014843 locus=Lus10014843.g ID=Lus10014843.BGIv1.0 annot-version=v1.0 MASISSSPRTVEEIFKDYTARRSALLRALTFDVDDFYSQCDPEKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCW LLSVAFYFGARLNRNERKRLFSMTNDLPSLFEVVTGRKPVKDKPSVDSGSKSRNSTKRTIDGHSKNNSKLLDENYGEDEDEHGETICGSCGGLYSADEFW IGCDICERWYHGKCVKITPAKADSIKHYKCPSCCTKKGRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	0	1
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10009889 [exp]	1.0	0.9405
AT5G20130			unknown protein		Lus10037880 [exp]	2.0	0.8332
AT1G27435			unknown protein		Lus10041533 [exp]	2.8	0.8176
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	4.0	0.7916
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	5.5	0.8139
AT1G72020			unknown protein		Lus10006080 [exp]	5.5	0.7888
AT1G20580			Small nuclear ribonucleoprotei...		Lus10030747 [exp]	7.0	0.8040
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	8.1	0.8244
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10008141 [exp]	10.2	0.7435
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	10.4	0.7908

Compare expression of checked genes

Lus10014843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.