Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55960 372 / 5e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 92 / 4e-22 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 87 / 7e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 79 / 5e-17 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 72 / 5e-14 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 65 / 1e-11 SSP4 SCP1-like small phosphatase 4 (.1.2) AT1G55900 65 / 1e-11 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G18140 64 / 2e-11 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G23470 48 / 3e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 46 / 1e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009890 [exp] 502 / 0 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 379 / 9e-133 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 301 / 6e-102 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004810 [exp] 271 / 7e-90 AT3G55960 295 / 3e-99 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007321 [exp] 97 / 3e-23 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 94 / 6e-22 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040202 [exp] 81 / 4e-19 AT3G55960 77 / 3e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10004596 [exp] 75 / 8e-15 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10025376 [exp] 74 / 2e-14 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G188500 [exp] 407 / 4e-144 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 390 / 2e-137 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 321 / 9e-110 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 303 / 5e-103 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G062900 [exp] 88 / 5e-20 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 87 / 1e-19 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G353700 [exp] 79 / 3e-16 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 72 / 4e-14 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G364500 [exp] 67 / 2e-12 AT1G55900 405 / 3e-141 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.011G093000 [exp] 66 / 5e-12 AT1G55900 415 / 5e-145 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10014844 pacid=23150212 polypeptide=Lus10014844 locus=Lus10014844.g ID=Lus10014844.BGIv1.0 annot-version=v1.0 ATGGCTGAGTTGACTCAGTCCGATGTGGTCTACTCTCCTCGGTCTCTCCAGCTATGGATGACGCTCTGGAACTGGCTGGCTTTCTTCTTCCAGATCTTCC TTCAGATCCTCAGAACTCTTGGACACCTTCCTCTTCTCTCCTCCTCCTCGACGACTTCTCACTCTTTCAAGCCCTTGCCCGACGTCGAATTGCCGGAGAT CGATTCTGCTCCTTCTCCTTCCACTTTGGAGATCGCCACCGGTGACCTCGACTCCGGTCGGATAATTCAGCCCCTCCAAAGACTCACGGTTGTTCTCGAC TTGGACGAGACTCTGATTTGTGCATACGAGACCTCCAGTTTGCCTCCGGCCCTCAGGAGCCAGGCCACTGACGCCGGATTGAAGTGGTTCGAGTTGGAGT GCGTGTCGTCAGACAAGGACAGTGACGGGAAACCTAAGATCAATTATGTTACGGTGTTTGAGCGTCCAGGGTTGCATGAATTCCTTAAAAAGCTCAGTGA ATTTGCTGACCTTGTGCTCTTCACTGCTGGCTTGGAAGGTTATGCTAGACCCCTTGTTGACAGAATAGATACAGAAAAGCTGTTTAGCCTTCGCCTTTAT CGGCCATCGACGACTAGCACGGAATACCGTGAGCATGTGAAGGATCTATCTCGCATATCAAACGATGGCAGCCACATTGTTATTGTGGACAACAACCCAT TCAGTTTCTTGTTACAACCCTTGAATGGAATCCCATGCATTTCATTTTCTGCTGGCCAACCACAGGACACACAGCTACTAGATATAATCCTACCTCTCCT GAAGCACCTATCTCAGCAGATGGACGTGAGGCCAGTGCTGTATGAGAGATTCCACATGCCTGAATGGTTTCAGAAACATGGAATCCCTGCTTCTGTCTGG ACATGA
AA sequence Show only first row Show all	>Lus10014844 pacid=23150212 polypeptide=Lus10014844 locus=Lus10014844.g ID=Lus10014844.BGIv1.0 annot-version=v1.0 MAELTQSDVVYSPRSLQLWMTLWNWLAFFFQIFLQILRTLGHLPLLSSSSTTSHSFKPLPDVELPEIDSAPSPSTLEIATGDLDSGRIIQPLQRLTVVLD LDETLICAYETSSLPPALRSQATDAGLKWFELECVSSDKDSDGKPKINYVTVFERPGLHEFLKKLSEFADLVLFTAGLEGYARPLVDRIDTEKLFSLRLY RPSTTSTEYREHVKDLSRISNDGSHIVIVDNNPFSFLLQPLNGIPCISFSAGQPQDTQLLDIILPLLKHLSQQMDVRPVLYERFHMPEWFQKHGIPASVW T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	7.3	0.7955
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	7.7	0.8327
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	9.1	0.8358
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	9.4	0.8143
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	13.4	0.7925
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	14.0	0.7582
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	15.6	0.7919
AT5G06740			Concanavalin A-like lectin pro...		Lus10028699 [exp]	18.7	0.7028
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	20.5	0.7986
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	22.1	0.8220

Compare expression of checked genes

Lus10014844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.