Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55920 281 / 7e-96 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G29960 280 / 1e-95 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 278 / 7e-95 ROC7 rotamase CYP 7 (.1) AT2G21130 214 / 3e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34960 216 / 4e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 211 / 5e-69 ROC3 rotamase CYP 3 (.1.2) AT4G38740 211 / 5e-69 ROC1 rotamase CYP 1 (.1) AT3G56070 211 / 6e-69 ROC2 rotamase cyclophilin 2 (.1.2) AT3G62030 207 / 4e-66 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 203 / 1e-64 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030408 [exp] 362 / 2e-126 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018238 [exp] 285 / 2e-97 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 285 / 2e-97 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10038315 [exp] 254 / 6e-85 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10036180 [exp] 239 / 1e-78 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 218 / 2e-71 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 217 / 4e-71 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 215 / 3e-70 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 214 / 3e-70 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189000 [exp] 317 / 9e-110 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G046500 [exp] 276 / 8e-94 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 273 / 5e-93 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.019G014396 [exp] 223 / 1e-73 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G173500 [exp] 224 / 2e-73 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G132800 [exp] 222 / 2e-72 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 219 / 6e-72 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 219 / 6e-72 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 217 / 3e-71 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 216 / 8e-71 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10014846 pacid=23150210 polypeptide=Lus10014846 locus=Lus10014846.g ID=Lus10014846.BGIv1.0 annot-version=v1.0 ATGTCGACGACGACGCGCCTGATCTCCATCGCTCTCCTTTGGATCGTGGTTCTTTTTGGAACCCTAGCTTTCATCCAGGTACGCAGGACCTGCCTCTTTC ATCTTTCTCTGCTTTCTTCCATGCCCTGGAGAAGTAGAAGCGCTGGGATTAAGTTCGAATTACGAGAAATCCAGCCTCGATTCATCCTCCTATTGAATGA CGCTTACTTCTTACTCCAATTAACACTTGTTCCCTACTGCCAGCATCGTTTAAGCGACCCAGGAATCTCGTCGGAGTCCAAAAACGTCGACAGCAGCAAG TTGGAGGACACCAAGTCTGGGGAGGGGTTGGAACAAGTGACTCACAAAGTCTACTTCGATGTTGAAATTGGTGGAGAGGCTTCTGGTCGCATTGTGATGG GTTTATTCGGGAGGGCAGTTCCAAAGACTGCAGAGAACTTTCGAGCACTATGCACTGGGGAGAAAGGCGAAGGAAAAAGTGGGAAGCCTCTACACTACAA GGGGAGCACATTCCACAGGATAATTCCTCAGTTCATGATCCAAGGAGGAGACTTCACTCTCGGTGATGGACGTGGTGGCGAATCAATCTATGGCGACAAG TTTGCCGACGAGAACTTCAAGTTGAAGCACACAAAGCCAGGAATGATATCAATGGCGAATTCTGGGCCGGACACGAATGGATCCCAGTTCTTCATTACAA CTGTTGTGACAAGCTGGTTGGATGGGCATCATGTGGTGTTTGGGAAGGTGCTTTCAGGGATGGACATTGTGGAAAAGATAGAAGGGGAAGGCCAAAACAG TGGGGTTCCCAAAAGCAAAGTGGTCATTGTAGACAGCGGGGAAATGCCAATGTAA
AA sequence Show only first row Show all	>Lus10014846 pacid=23150210 polypeptide=Lus10014846 locus=Lus10014846.g ID=Lus10014846.BGIv1.0 annot-version=v1.0 MSTTTRLISIALLWIVVLFGTLAFIQVRRTCLFHLSLLSSMPWRSRSAGIKFELREIQPRFILLLNDAYFLLQLTLVPYCQHRLSDPGISSESKNVDSSK LEDTKSGEGLEQVTHKVYFDVEIGGEASGRIVMGLFGRAVPKTAENFRALCTGEKGEGKSGKPLHYKGSTFHRIIPQFMIQGGDFTLGDGRGGESIYGDK FADENFKLKHTKPGMISMANSGPDTNGSQFFITTVVTSWLDGHHVVFGKVLSGMDIVEKIEGEGQNSGVPKSKVVIVDSGEMPM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	0	1
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	2.4	0.8284
AT4G23330			unknown protein		Lus10032266 [exp]	3.2	0.8097
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10036532 [exp]	3.9	0.7652
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	5.7	0.8098
AT5G63905			unknown protein		Lus10018677 [exp]	5.7	0.7778
AT1G69980			unknown protein		Lus10010734 [exp]	6.9	0.8211
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	7.1	0.8130
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	7.3	0.7848
AT1G29530			unknown protein		Lus10015254 [exp]	9.2	0.7847
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	11.5	0.7557

Compare expression of checked genes

Lus10014846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.