Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35540 365 / 1e-120 zinc ion binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030407 [exp] 245 / 2e-78 AT4G35540 90 / 8e-21 zinc ion binding;transcription regulators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G084700 [exp] 422 / 8e-143 AT4G35540 353 / 3e-116 zinc ion binding;transcription regulators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014847 pacid=23150225 polypeptide=Lus10014847 locus=Lus10014847.g ID=Lus10014847.BGIv1.0 annot-version=v1.0 ATGTCCTGCTCTAGCTGCGGACACGGAATAATCCGCGATGACGTCACCGGAAATCGCAGCTGCGGTTCTTGTGGCACCTTACAAGAATACGACAGCTACG AGGGGCACGCCTTCTGCATGCAAGGTCCGGTAGGTGTCAAGGTCCACGTCGGCACTACAGGTACGGGAGACTCCTTAGCATACAGGGAGAAGAAAATTTT CGAAGCTAATAATCTAATTAACGACATCACCAACAGTTTGGACTTGAGCGATACAACCGTGCACGAAATCAAGTCAATGATTGATGAAATTACCGAAGGT GAATTCGGTAAGGGCGAGTGGTTCAAGGTACTGATCGGCGCCTGTGCTTACGCTTACATGAGGAGTCGGAACAAAGCGATCTCGATCAGCCAAGTCGGGC AAGCGGTTGAGTGCGATGTTTACGAATTGGGGAGGATGGTGAAGCGGGTAGTCGAGCATTTAGAGCTTAGCTTGCCGGAGTTTGATATAGCGAATGCTTT TCAAAAGGTTGTGGCGAATTTCGCGAATTTGGGGAGGATTGATGGTGATATGGTTGAGAGAATAAAGAAGCAAGGTGTGTTCTTTATACAGTGTGCGATT AAGTGGTTTTTAACTACCGGGAGGAGGCCAATGCCAGTTGTGGCGGCAGTTTTTGCTCTGGTGGCAAAGCTAAATGGAATTCAGGATGTAAGGATTGATG ATGTAGCGAATTACCTTCTTGCTTCAGTTGTCACTTCTCAGCGGAGGTACAAAGAATTGCTGGAGAAGCTTGTGGAGGTAGCACAAGCATTGCCGTGGGG GAAGAATGTGACGGTGAAAAATGTCATCGAGAGTGCTCCGCCTATAATTCGATATATGGAGTTGAAGTCGAGTGCAAAGCGTGGCAAGGGGAGTGAAAAT TTCGACAGTGCTGTGTTTGATACAGGTGAAATCCTCAGTCAGTGCTTGAGTAACCAATTTAGTGATGGAGTTGAGGATGATGATGATGATGATGACAGAA GAGGGATTGTCGAAATGGGACACGAGGATGTTGATAACCTCCACCTCTCGCATGAGGGCTTGTCGATGGCGTATGAGAAGTTCTTGGTAGAAGGTAATGG CCGGATGTCGGCTGAGGAGACTGGAGGTGTGGCTGAACTTCCTAGTCAAGGGGAATACAGTGGAGGAATTGGAGTGCTGTATGCATCAGAATGGTGGAAT GGGAAATCACCATTGAGCAAGAAACTTGTTTTGAAGGATATACTGGAGAACGATGTGGGATTGGACGCTCTGCCTCCGTCTTTTGTCAAGGGTTGCGCCG ATATTAAGAGAAGGAGAGCGAAGATAAAAGCTGCAAAGGAGCGTCTTGAAAGAAACGAGTTACCATCGAACGGTGATGAAGCTAGTACTACCAGGGACAT TGAGCTTGTGGATGCTGCATATAGCAAGAAAAGGAAACGAAAAGAGGAGAATATTGATTGGGAAGATCTTATCATCGAGGCCCTTATTGTTCATCAGGTG AAAGAGGAGGAAATTGAGAAGGGGTACTATAAAGCCCTGTTGGGATTGCATGTGTTCAATTCTGGGATTGATGTAAAAGAAAAGGCCACGACTTGA
AA sequence Show only first row Show all	>Lus10014847 pacid=23150225 polypeptide=Lus10014847 locus=Lus10014847.g ID=Lus10014847.BGIv1.0 annot-version=v1.0 MSCSSCGHGIIRDDVTGNRSCGSCGTLQEYDSYEGHAFCMQGPVGVKVHVGTTGTGDSLAYREKKIFEANNLINDITNSLDLSDTTVHEIKSMIDEITEG EFGKGEWFKVLIGACAYAYMRSRNKAISISQVGQAVECDVYELGRMVKRVVEHLELSLPEFDIANAFQKVVANFANLGRIDGDMVERIKKQGVFFIQCAI KWFLTTGRRPMPVVAAVFALVAKLNGIQDVRIDDVANYLLASVVTSQRRYKELLEKLVEVAQALPWGKNVTVKNVIESAPPIIRYMELKSSAKRGKGSEN FDSAVFDTGEILSQCLSNQFSDGVEDDDDDDDRRGIVEMGHEDVDNLHLSHEGLSMAYEKFLVEGNGRMSAEETGGVAELPSQGEYSGGIGVLYASEWWN GKSPLSKKLVLKDILENDVGLDALPPSFVKGCADIKRRRAKIKAAKERLERNELPSNGDEASTTRDIELVDAAYSKKRKRKEENIDWEDLIIEALIVHQV KEEEIEKGYYKALLGLHVFNSGIDVKEKATT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	0	1
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	1.0	0.8352
AT5G65490			unknown protein		Lus10002654 [exp]	7.7	0.8105
AT5G43490			unknown protein		Lus10003153 [exp]	8.4	0.7875
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	11.6	0.7704
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	11.8	0.7847
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	11.9	0.7955
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	12.8	0.7769
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	15.3	0.7817
AT3G51650			unknown protein		Lus10025247 [exp]	17.4	0.7828
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	18.5	0.7942

Compare expression of checked genes

Lus10014847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.