Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40095 184 / 1e-58 Alpha/beta hydrolase related protein (.1) AT3G55880 182 / 4e-58 SUE4 sulphate utilization efficiency 4, Alpha/beta hydrolase related protein (.1.2) AT1G80280 104 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 87 / 7e-20 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 84 / 2e-18 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030405 [exp] 284 / 4e-98 AT2G40095 220 / 3e-73 Alpha/beta hydrolase related protein (.1) Lus10028294 [exp] 258 / 8e-88 AT2G40095 262 / 1e-89 Alpha/beta hydrolase related protein (.1) Lus10040195 [exp] 257 / 5e-87 AT2G40095 231 / 8e-77 Alpha/beta hydrolase related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067700 [exp] 233 / 7e-78 AT2G40095 229 / 1e-76 Alpha/beta hydrolase related protein (.1) Potri.010G189600 [exp] 219 / 1e-72 AT2G40095 207 / 6e-68 Alpha/beta hydrolase related protein (.1) Potri.003G059400 [exp] 114 / 4e-29 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 108 / 4e-27 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014849 pacid=23150217 polypeptide=Lus10014849 locus=Lus10014849.g ID=Lus10014849.BGIv1.0 annot-version=v1.0 ATGGGATCCCCAAAGGAAGAGAAATCAAAGAGAGTTTTGAGAGGAGTCAAGACTGTTTTCTTCTTAATCACAATGATCGTCTCCTTCCTCCTCTTCTCAG CTCCAGTCCTCCTCGTTATCGCCGATGCTCTCCTCCCAATCTCCCTCCTCTCCGCTTCCCTCTCCCTTTCTTCTCTCTCCCTCGCCACTATCTCCGACGA CCTCTCCAACTACGATTTCCGTTACTCCCTCGTCGACATCCCCCTCGTTTCCATCCTCAGATCCGCCCTCATCTTCTGCGTTTACAGCTTTTGCGACGGA CCTAGGCTGTCTCGGGGCCCTTACTTGGGGATTACTGCGATTTGCTCCGTCTCCTCACTGATTTACGTTTCCGCCAAGGCGCCGTACGCTTCACTGATTT ACGTTTCGGCCAAGGCGCCGTACGCTTTCAGCAGGATTGATCGGGGAGGCTATGCCCGTGGGATGGAGATTGCTCTGTTTATCTGCTCGCTGTTTCTGGC GATTGCTCACGTCGTAGTAGCGTACCGGACAAGTTGCAGAGAGCGAAGGAAGCTTCTGGTTTACAAAATTGACATTGAAGCTGTTAATCCCGAGAAAGCC TCCGACAAGGAGATGAATAGAGACGAAGACGATGAGGAAAAAGATGAAGAAGACTAA
AA sequence Show only first row Show all	>Lus10014849 pacid=23150217 polypeptide=Lus10014849 locus=Lus10014849.g ID=Lus10014849.BGIv1.0 annot-version=v1.0 MGSPKEEKSKRVLRGVKTVFFLITMIVSFLLFSAPVLLVIADALLPISLLSASLSLSSLSLATISDDLSNYDFRYSLVDIPLVSILRSALIFCVYSFCDG PRLSRGPYLGITAICSVSSLIYVSAKAPYASLIYVSAKAPYAFSRIDRGGYARGMEIALFICSLFLAIAHVVVAYRTSCRERRKLLVYKIDIEAVNPEKA SDKEMNRDEDDEEKDEED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	0	1
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	3.5	0.8386
AT5G44860			unknown protein		Lus10036220 [exp]	3.5	0.8605
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	4.9	0.8350
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	5.7	0.8221
AT1G25400			unknown protein		Lus10041438 [exp]	6.0	0.8194
AT1G76200			unknown protein		Lus10034571 [exp]	7.7	0.8202
AT3G57450			unknown protein		Lus10018070 [exp]	13.6	0.7982
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	13.7	0.7655
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	20.1	0.7631
AT1G21326			VQ motif-containing protein (....		Lus10042794 [exp]	22.0	0.7679

Compare expression of checked genes

Lus10014849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.