Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05690 610 / 0 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 331 / 4e-108 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 310 / 3e-100 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G30180 255 / 1e-79 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 203 / 1e-59 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G50660 187 / 3e-53 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT2G32440 180 / 8e-51 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G05160 179 / 1e-50 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT1G73340 179 / 2e-50 Cytochrome P450 superfamily protein (.1) AT5G38970 160 / 2e-44 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040193 [exp] 654 / 0 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10030404 [exp] 606 / 0 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028297 [exp] 427 / 7e-149 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10041794 [exp] 308 / 1e-99 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10005075 [exp] 258 / 4e-81 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10034377 [exp] 256 / 3e-80 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 243 / 6e-75 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10031295 [exp] 241 / 1e-73 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 221 / 2e-66 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G189800 [exp] 631 / 0 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 618 / 0 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 338 / 3e-111 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 335 / 6e-110 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.010G156800 [exp] 268 / 2e-84 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.004G117700 [exp] 251 / 9e-78 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.001G242600 [exp] 211 / 3e-62 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.007G018400 [exp] 210 / 5e-62 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.004G235400 [exp] 196 / 8e-57 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.002G069600 [exp] 187 / 2e-53 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014850 pacid=23150157 polypeptide=Lus10014850 locus=Lus10014850.g ID=Lus10014850.BGIv1.0 annot-version=v1.0 ATGGTGAGCAATAGTCGTGATGACCATCTCTTCTTCTTCCTCTTCCTCCTTTCCCTCCTCTCTTTCTTCTTCATCCTCCACCGCCGCAGCACTCGCCGGA GCCTCCGTCTCCCGCCGGGGACCACCGGGATGCCCTTTGTAGGGGAGACGCTGCAGTTAATATCAGCCTATAAGTCGGAAAACCCGGAACCGTTTATGGA CGAGAGGGTGGGCCGGTTCGGCCCAGTGTTTACCACCCACGTGTTTGGTGAGCCGACCGTTTTCTCGACCGATCCGGAACTGAACCGGCTGATTCTTCAG TCTGAAGGGAAGCTTGTGGATGTGAGCTACCCCGGTTCGATTTCCAACCTACTGGGTAAGCATTCTCTTCTCCTCATGAAAGGCGGCCTTCACAAGAGAA TGCATTCTCTCACCATCAGCTTCGCCAACCCTACCATTATGAAGGATCACCTCTTGTTCGATATCGATCGGTTGGTCCGGTTGAACCTTAACTCTTGGTC TGAACGCGTCCTCCTCCAGGAAGAAGCTAAAAAGATAACTTTCGAATTAGCGATGAAGCAGCTGATGAGCAAGGAGCCAGGGGAATGGACAGAGATGCTA AGAAGGCAATACTTGCTATTAATTGAAGGATTCTTCACTCTCCCAGTTCCTCTCTTTTCCACCACTTACCGCCGAGCCATCCAAGCCAGGACCAAAGTTG CCGAGGCGCTGAGGTCGGTAGTGAGGGAGAGGAGGAAAGAGTCGTCGTCGACGACGGGGGAGAATAATAGTAATAATATTAAGAAGAAGAAGAATGATAT GTTGGCGGCGCTTTTGGCTGCCGACGACGGCTTATCCGACGAGGAAGTGGTGGATTTGCTTGTGAATCTACTAGTGGCGGGATACGAAACGACGTCGACT AGCATGACCCTCGCCGTTAAGTTCGTTACTGAGACTCCCCTGGCTTTGTCCCAACTCCGGGAAGAGCATGATGAGATAAGGGCGAGGAAAGTGGAAGCGG ATGATGCTATCGAGTGGAGTGACTACAAGTCCATGCCCTTCACTCAATGTGTTGTTAACGAGACGTTGAGAGTGGCGAACATAACAGGCGGGGTGTTCAG GCGAGCCATTGCTGATATCCCTATCAATGGATACACAATCCCAAAAGGGTGGAAGGTGTTTGCATCATTCCGAGCAGTACATATGAACCAGGATCACTAC AAAGATGCTCGAACTTTCAACCCCTGGAGATGGCAGACGAATTCAAGGGCTGCAATTCCTGGGAATTTGTTCACTCCTTTCGGAGGAGGGGGTCGAATTT GCCCTGGTTATGAGCTAGCCAGAGCTCAGCTCTCTGTTTTCCTTCACCATTTTGTCACTAGTTTCTGTTGGGAGGCAGCTGAGGAAGATAAGGTGGTGTT TTTCCCGACGACCAGGACACAAAAGCGTTATCCGATCAACGTCCGCCGACGGCAGCACGTCAGAGCATTGTAG
AA sequence Show only first row Show all	>Lus10014850 pacid=23150157 polypeptide=Lus10014850 locus=Lus10014850.g ID=Lus10014850.BGIv1.0 annot-version=v1.0 MVSNSRDDHLFFFLFLLSLLSFFFILHRRSTRRSLRLPPGTTGMPFVGETLQLISAYKSENPEPFMDERVGRFGPVFTTHVFGEPTVFSTDPELNRLILQ SEGKLVDVSYPGSISNLLGKHSLLLMKGGLHKRMHSLTISFANPTIMKDHLLFDIDRLVRLNLNSWSERVLLQEEAKKITFELAMKQLMSKEPGEWTEML RRQYLLLIEGFFTLPVPLFSTTYRRAIQARTKVAEALRSVVRERRKESSSTTGENNSNNIKKKKNDMLAALLAADDGLSDEEVVDLLVNLLVAGYETTST SMTLAVKFVTETPLALSQLREEHDEIRARKVEADDAIEWSDYKSMPFTQCVVNETLRVANITGGVFRRAIADIPINGYTIPKGWKVFASFRAVHMNQDHY KDARTFNPWRWQTNSRAAIPGNLFTPFGGGGRICPGYELARAQLSVFLHHFVTSFCWEAAEEDKVVFFPTTRTQKRYPINVRRRQHVRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10038915 [exp]	3.7	0.8875
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	4.2	0.8798
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001741 [exp]	5.0	0.9052
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	5.5	0.9046
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10023598 [exp]	7.7	0.8909
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10023913 [exp]	10.3	0.9050
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10030404 [exp]	14.1	0.8504
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	16.3	0.8010
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	17.8	0.8889
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	20.4	0.8839

Compare expression of checked genes

Lus10014850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.