Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 777 / 0 ARA12 Subtilase family protein (.1) AT2G05920 594 / 0 Subtilase family protein (.1) AT3G14240 530 / 0 Subtilase family protein (.1) AT5G51750 523 / 3e-179 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 509 / 9e-174 Subtilase family protein (.1) AT4G34980 494 / 8e-168 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 433 / 4e-144 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 431 / 3e-143 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G59810 429 / 1e-142 ATSBT5.4 Subtilase family protein (.1) AT2G04160 426 / 2e-141 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011089 [exp] 1015 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 832 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 831 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 701 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10018702 [exp] 590 / 0 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 571 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 567 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 506 / 2e-172 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 501 / 4e-170 AT3G14240 1177 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018900 [exp] 732 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 721 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 714 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 572 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 556 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 545 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 540 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 526 / 1e-180 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 506 / 1e-172 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G163600 [exp] 506 / 1e-172 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10014853 pacid=23142422 polypeptide=Lus10014853 locus=Lus10014853.g ID=Lus10014853.BGIv1.0 annot-version=v1.0 ATGGCGAACAGAGCACGGGTTGCTGTTTATAAAGTGTGTTGGGTTGGAGGCTGTTTCAGCTCTGATATTCTTGCAGCCATGGATAAGGCGATTGAGGACG GTGTCAATGTCATGTCAATGTCACTCGGTGGAGGGAACTCCGACTATTACAGAGACAGTGTTGCCATTGGAGCTTTCTCGGCTATGGAGAAGGGGATCTT GGTCTCTTGCTCTGCTGGAAATGCTGGCCCAACTGCTTACAGCTTGTCTAATGTTGCTCCATGGATAACTACTGTTGGAGCGGGAACGGTCGATCGGGAT TTCCCTGCTTTTGTTAGCTTGGGAAACGGCCAGAACTATTCAGGTGTCTCCCTGTTCAAGGGAGCCTCCTTGCCTGCCAATCTTCTGCCGTTCGTTTACG CCGGTAATGCTAGCAACGCTACCAATGGGAATCTTTGTATGATGGGAACTCTGATTCCGGAGAAAGTGAAGGGCAAAATTGTGCTCTGTGACAGGGGAGT GAATGCCAGAGTCCAGAAAGGAGCAGCAGTGAAAGCCGCCGGCGGATTGGGAATGGTTTTGGGCAACACCGAAGCCAACGGCGAGGAGTTGGTTGCCGAT GCTCACTTGCTCCCGGCAACGGCGGTAGGTCAGAGGACAGGGGACTCAATCAAGAAATACTTGACCTCAGATCCAAGCCCCAAGGCAACAATACTCTTCG AGGGGACAAAGCTCGGGATCGAGCCTTCACCGGTGGTGGCGGCGTTCAGCTCAAGAGGTCCAAACTCAATCACGCCGGAGATTCTCAAACCGGATATCAT AGCGCCAGGTGTCAACATCTTAGCTGGTTGGACGGGTAAGATCGGTCCCACAGGGTTAGCAACGGATTCCCGACGAGTGGAGTTCAACGTCATCTCCGGC ACCTCCATGTCTTGTCCACACGTCAGCGGCCTTGCCGCCCTCCTCAAGGCGGCGCATCCGGAGTGGAGTCCCGCCGCCATCAGATCAGCGCTGATGACCA CCGCTTACTCAACATATAAAAGCGGGCAGAAGTTGCAAGACGTGGCCACAGGGAACGACTCGACGCCGTTCGATCACGGAGCTGGACACGTGAATCCGGT TGCAGCTCTTAATCCGGGACTGGTGTACGATCTGATGGCGGAGGATTACTTAGGGTTCTTGTGCGCGCTGAACTACACCGATATGCAGATCAAAAGCGTG GCGAGGAAGAACTATACTTGCGACCAGAAGAAGAAGTACAGTGTGGCCAATCTCAACTACCCTTCGTTCGCCGTAAATGTGGATACAACTGATATGAGCG CCGGAGGAAAGGTTGTGATAAAACACAGTCGGACACTGACGAACGTAGAAGTGGGGCCTGCAATGGAGTACAGGGTGTCAGTTTCACCAAAGGAAATCCC AGGGGTTAAGATTGAGGTTGAGCCTAAAACGCTAAGTTTCAAGAATGTCAACGAGAAGAAGAGTTACACGGTGACGTTTACAGCGGATTCCATGCCGATG AGTACCAACAGTTTCGCACGGTTGGAGTGGTCTAATGGGAAACGCAGTGTCGGGAGTCCGATAGCGGTTAGCTGGACTTAG
AA sequence Show only first row Show all	>Lus10014853 pacid=23142422 polypeptide=Lus10014853 locus=Lus10014853.g ID=Lus10014853.BGIv1.0 annot-version=v1.0 MANRARVAVYKVCWVGGCFSSDILAAMDKAIEDGVNVMSMSLGGGNSDYYRDSVAIGAFSAMEKGILVSCSAGNAGPTAYSLSNVAPWITTVGAGTVDRD FPAFVSLGNGQNYSGVSLFKGASLPANLLPFVYAGNASNATNGNLCMMGTLIPEKVKGKIVLCDRGVNARVQKGAAVKAAGGLGMVLGNTEANGEELVAD AHLLPATAVGQRTGDSIKKYLTSDPSPKATILFEGTKLGIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGKIGPTGLATDSRRVEFNVISG TSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYSTYKSGQKLQDVATGNDSTPFDHGAGHVNPVAALNPGLVYDLMAEDYLGFLCALNYTDMQIKSV ARKNYTCDQKKKYSVANLNYPSFAVNVDTTDMSAGGKVVIKHSRTLTNVEVGPAMEYRVSVSPKEIPGVKIEVEPKTLSFKNVNEKKSYTVTFTADSMPM STNSFARLEWSNGKRSVGSPIAVSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	0	1
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	1.7	0.8804
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	3.9	0.8476
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	4.0	0.8421
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	4.2	0.8686
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	8.4	0.8406
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	8.9	0.8375
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	9.8	0.8387
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Lus10001522 [exp]	11.6	0.8361
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	11.8	0.8336
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	12.7	0.8382

Compare expression of checked genes

Lus10014853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.