Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23093 472 / 8e-165 Major facilitator superfamily protein (.1) AT3G49310 121 / 6e-30 Major facilitator superfamily protein (.1) AT4G27720 119 / 4e-29 Major facilitator superfamily protein (.1) AT1G64650 114 / 2e-27 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011083 [exp] 778 / 0 AT2G23093 502 / 1e-176 Major facilitator superfamily protein (.1) Lus10033228 [exp] 104 / 4e-24 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10003219 [exp] 103 / 9e-24 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 103 / 2e-23 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052700 [exp] 551 / 0 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1) Potri.012G020500 [exp] 117 / 2e-28 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.015G008100 [exp] 115 / 5e-28 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.003G145600 [exp] 111 / 2e-26 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05631 [flax] [poplar] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Lus10014854 pacid=23142412 polypeptide=Lus10014854 locus=Lus10014854.g ID=Lus10014854.BGIv1.0 annot-version=v1.0 ATGGTGGTTGGGGTAATCGAGAGCTCCTTCTGGTTGCCAAATGTTTCGCTCTTCGGTTTCATTTTCATTTGCTGCTTCTTCTCCATTAGTCTCTTACCTC AAGCCTCTAAGACTAATCGATCGCTCGGCCCTTTGGACAATGCCGCTTCTTCTTCTTCCTTCTCTTCTCCAACCTCCGCTTTCCTCCGCTTCCAGCGGAA GTTCCTGCTCATCTACTCTCTAGCGTCAGTGATGGAAGGGTTGTGGGCGGTGTTCGGAGAGTACGAATTGGCATTTTATGGAGTCAGCAAGGAGCAGATG GTGACGTCTCTTTCGGTCGGTTATGGGGCTTCCTTGATTGTTGGTACTTTTTTAGGAATGGTTTCTGATTCAATCGGTCACAATAAAGCCTGCTTGATCT TTAGCGTTCTACATCTCTTTGTTGGTGTGTGGAAGAAAATCGCACCTCACCCTAGTCTCTGGCTAGCAAGCATATGCTTGTCGCTTTCTACCTCGATATA TTCCTTCAGTTTCGAGGCATGGCTTGCTGTCGAAAATGAAAAGCAAGGATACAGGCAAGACACTTTGAGTTACACGTTTTGGTTGATGACTTTCTTTGAG TCTGTATCGTTGATTCTAAGCCAAGTCCTTGCCAATTGGCTGCTAGGGAGTAATGCGGGGAATGGTCTAATATCTCCTTCCACTGCTTCCATCCTTCTAT CATTCTTGTGCATCATCTGTGTTAGCAATGGTTGGAAGGCAACCTCGGAAACTGCAGTAACCAAGGATTATAACGTCTCTTATGCGCATATTTTCAAAGA CAAACGGATATTGCTCCTAGGATTTGCACATGCCTGCCTCCAGTTCTCCATTGCAATCTTCTGGCTTTTGTGGGCTCCAACTCTGGTGGCTGATGGGCGA GAAGTACATCTGGGACTAGTATATCCCTGCTTATTGGGTGCAAGAATGCTGGGAAGCACCATATTCCCTTGGCTGTTGACTGGTCCTTCATCTCTTCTTA CAGAGGATTGTCTTATGTATGCATTTGTTGTACTTGGGATCTCCTTGTCTGTAATTGCATATGATTACCAGGAAATTACAGTTTTGGTGTCCCTATTTTG CTTATTCCATGCTGTTGTGGGGCTTATTATTCCTTCTCTTGCAAGATTGAGGACCATGCATGTCCCAAACGAATTACGTGGAGGGATGATTGCCCTATCT CTAGCTCCTGCGCATGCAGCAATACTTTTGATGTTGGTGCAAAGAGGTTACTACGACAGCATTGAGAATTCAACAATGATAGCACTTGCATCGCTGGGGC TTTTTGCATCAGCTGCTTGCATGTATCTACTGAAGCAGTGGGGAAAGCAACCTTACCAGAACTGGCACAAGATGTGA
AA sequence Show only first row Show all	>Lus10014854 pacid=23142412 polypeptide=Lus10014854 locus=Lus10014854.g ID=Lus10014854.BGIv1.0 annot-version=v1.0 MVVGVIESSFWLPNVSLFGFIFICCFFSISLLPQASKTNRSLGPLDNAASSSSFSSPTSAFLRFQRKFLLIYSLASVMEGLWAVFGEYELAFYGVSKEQM VTSLSVGYGASLIVGTFLGMVSDSIGHNKACLIFSVLHLFVGVWKKIAPHPSLWLASICLSLSTSIYSFSFEAWLAVENEKQGYRQDTLSYTFWLMTFFE SVSLILSQVLANWLLGSNAGNGLISPSTASILLSFLCIICVSNGWKATSETAVTKDYNVSYAHIFKDKRILLLGFAHACLQFSIAIFWLLWAPTLVADGR EVHLGLVYPCLLGARMLGSTIFPWLLTGPSSLLTEDCLMYAFVVLGISLSVIAYDYQEITVLVSLFCLFHAVVGLIIPSLARLRTMHVPNELRGGMIALS LAPAHAAILLMLVQRGYYDSIENSTMIALASLGLFASAACMYLLKQWGKQPYQNWHKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	0	1
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	6.2	0.7429
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	7.1	0.7998
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	11.8	0.7559
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	12.9	0.7858
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	14.7	0.7450
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	25.4	0.7396
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	29.4	0.7836
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	33.6	0.7785
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Lus10031921 [exp]	54.0	0.7367
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	59.5	0.7385

Compare expression of checked genes

Lus10014854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.