Plant FIBer expression Database

Lus10014855 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005846
[exp]
215 / 2e-72 ND /
Lus10039516
[exp]
210 / 9e-71 ND /
Lus10019586
[exp]
210 / 1e-70 ND /
Lus10039394
[exp]
210 / 3e-69 ND /
Lus10005851
[exp]
209 / 3e-69 ND /
Lus10025361
[exp]
214 / 3e-68 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Lus10027694
[exp]
206 / 6e-68 ND /
Lus10022968
[exp]
215 / 5e-66 AT1G10790 214 / 8e-63 unknown protein
Lus10004817
[exp]
197 / 5e-65 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10014855 pacid=23142432 polypeptide=Lus10014855 locus=Lus10014855.g ID=Lus10014855.BGIv1.0 annot-version=v1.0
ATGGAGCGTGATGGGGTCGAGTTGAAACCATACCACCTCCACCCTTTTTGGCGATCGTTGGAATACCGTCTTCCTGTAGACAGTGAGAAGTGGGAAGAGC
ATGACGCAACAGACCGCGCCATCCTCAGTGGGATGGTACAAACGATTTGTGATAGAGGTGGGCCTGCTATACGTGTCTTAACTACACTGGTACTGATCCA
GTATCAACCAGAATCAGACAGAGTGAAAGAGCCGAAGAAGTCGAATGCGCCTAAGGGCAGGCCCCGTGCGCAAAAGACGGATGGGCGGAACCCTTTGTAC
CACGAGCATGTGAGTGCTCATTGTACCCCATCCAAGGGCAAGACCAAATCAGGTTGCTCAACGCCCCAGGTACGGTCTCTGTTGGTTGAAACCCACGTAC
ATGTCTGCAACACTGCATTTGAGATGCTCGACCGCCTCCAGGTACTCAGCATCAGAATCGTACTCCTGTCTCATCGTCCCAATAAGGTATGGATGCATAT
GGTCCAACACCCTGTAAGCTAG
AA sequence
>Lus10014855 pacid=23142432 polypeptide=Lus10014855 locus=Lus10014855.g ID=Lus10014855.BGIv1.0 annot-version=v1.0
MERDGVELKPYHLHPFWRSLEYRLPVDSEKWEEHDATDRAILSGMVQTICDRGGPAIRVLTTLVLIQYQPESDRVKEPKKSNAPKGRPRAQKTDGRNPLY
HEHVSAHCTPSKGKTKSGCSTPQVRSLLVETHVHVCNTAFEMLDRLQVLSIRIVLLSHRPNKVWMHMVQHPVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014855
[exp]
0 1
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10021048
[exp]
2.0 0.8357
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Lus10014724
[exp]
10.0 0.7555
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10021049
[exp]
12.1 0.8186
AT1G22440 Zinc-binding alcohol dehydroge... Lus10000624
[exp]
13.6 0.7860
AT3G08030 Protein of unknown function, D... Lus10029503
[exp]
21.2 0.8175
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Lus10005885
[exp]
35.1 0.7696
Lus10024934
[exp]
39.4 0.6706
AT3G14520 AtTPS18 Terpenoid cyclases/Protein pre... Lus10002660
[exp]
45.2 0.7700
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10004178
[exp]
45.8 0.6983
AT3G28470 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPM... Lus10033119
[exp]
48.7 0.6639

Lus10014855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.