Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67385 490 / 7e-169 Phototropic-responsive NPH3 family protein (.1) AT3G49970 371 / 3e-123 Phototropic-responsive NPH3 family protein (.1) AT5G48800 307 / 2e-97 Phototropic-responsive NPH3 family protein (.1) AT2G30520 281 / 1e-87 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT2G47860 263 / 2e-80 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08570 259 / 3e-79 Phototropic-responsive NPH3 family protein (.1) AT1G03010 256 / 6e-78 Phototropic-responsive NPH3 family protein (.1) AT5G67440 216 / 6e-63 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT5G03250 213 / 4e-62 Phototropic-responsive NPH3 family protein (.1) AT2G23050 210 / 6e-62 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011082 [exp] 648 / 0 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 610 / 0 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10019290 [exp] 560 / 0 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10038169 [exp] 334 / 2e-104 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 313 / 1e-99 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 282 / 5e-88 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 279 / 6e-87 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10005943 [exp] 244 / 6e-73 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 218 / 2e-63 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053200 [exp] 550 / 0 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 326 / 1e-104 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 283 / 4e-88 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 281 / 5e-87 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 277 / 1e-85 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.019G131600 [exp] 275 / 1e-85 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.013G159000 [exp] 266 / 4e-82 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G090400 [exp] 243 / 8e-73 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 234 / 5e-69 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 231 / 8e-68 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10014858 pacid=23142427 polypeptide=Lus10014858 locus=Lus10014858.g ID=Lus10014858.BGIv1.0 annot-version=v1.0 ATGTCTAAAAAGGAGCTTCTTTCCTCTGCTATGAAGAGAACAGGCGAATGGATTTTCTCTCAGGAATTCTCCAGTGAAGTTACAGTCTATGTTGGTGGAA CGTCTTTTTCTTTGCATAAGTTTCCCTTATTGTCGAAGTCAGGCTACATTAGAAAGCTAGTGTCAGAAAGCAATGATGCTGATCCTTCGGAGGTTCATTT ACCTGAAATACCTGGCGGGCCAGAAGCATTTGAGCTTGCTGCCAAGTTCTGCTACGGAATCAATTTTGAGATAGGCACAGAGAACATTGCTGTCCTTCGA TGCGTGGCAGAGTATCTGGAAATGACGGAGGACTTTGCAGTTGGAAATTTGGTGTCAAGAGCAGAAGCCTATCTAAATGAAGTTACTCTCAAGAGCCTCA CTGGTGCAATTTCAGTACTGAACCACTCACAAAGTCTGGGTCCTATTGCAGAACAAGTGAAATTGGTGAGCCGATGCATAGATGCAATAGCACTAATGAC CTGCATGGAAAGCCAACTCTCTATCGCAGCAGACAGGACTGATGGTCTCATTGATGGCTTGCTTTCTTCCACAGTCTCACACTCCAAGCCGATTGTTGAT TGGTGGGCTGAAGATTTAACTGCTCTCAGAATTGATATTTTTCAAAGAGTATTTATTGCAATGGTAGCAAGAGGATTCAAGCAGTATGCTCTTGGCCCTG TACTTATGCTCTATGCACAGAAATCCCTGCGAGGTTTGGAGACATTTGGTACGGGGAGAAAAAGGATTGAGGCTGCTAAACAAGAGCATGAGAAAAGGGT TGTTCTAGAAACTATAGTTAGCCTTTTGCCAAAGGAGAAACATGCATTGTCTGTTAGCTTCCTGTCTATGCTGCTCCGAGCTGCAATCTATCTGGAGACA ACTGTTGCTTGCCGGCTTGATTTGGAGAAGAGGATGGCATCACAATTAGGCCAAGCTGTGTTGGATGACCTGTTGATCCCTGCAAATTCGTTTACAGGGG ACACACTCTATGACGTGGATACAGCTCATCCTGAATTGAGCGACATGGAGAGGAAGAAGGTTTGCAGTATAATGGACTGCCAGAAACTATCTCGAGAAGC CTGCGCTCACGCTGCACAGAATGACAGGCTTCCAGCTCAGACAGTGGTTCAAGTTCTTTACTACGAGCAACAACGCCTCCAAGATGCCAAGACTAATTCG GGGGATCAATCCACTCCCAGGGTTCCACTCTACTCCACTGACATCCACACGGTTTCTGATGAACTGTCCAGCTTAAAAAGAGAGAACCAAGACCTCAAAT TTGAACTTGTCAAAATGAAAATGAAGATGAAGGAGCTTGAGAAGTCAACTGCTCCTGCTGCTAGATCAACAGCAGGCAGTCCAATGTCGTCAATTAACTC ACGTTCTGCTGACAAACCCCCTCTTCCCCCGAATAAAAAGTCATTCATCAACTCTGTATCAAAGAAGTTAGGAAAACTCATGCGGCCTGATGGGCTCTCA ACATCCAGACCTCGAACCAAACCTCCTAAAGATAGGCGCCATTCTATATCTTGA
AA sequence Show only first row Show all	>Lus10014858 pacid=23142427 polypeptide=Lus10014858 locus=Lus10014858.g ID=Lus10014858.BGIv1.0 annot-version=v1.0 MSKKELLSSAMKRTGEWIFSQEFSSEVTVYVGGTSFSLHKFPLLSKSGYIRKLVSESNDADPSEVHLPEIPGGPEAFELAAKFCYGINFEIGTENIAVLR CVAEYLEMTEDFAVGNLVSRAEAYLNEVTLKSLTGAISVLNHSQSLGPIAEQVKLVSRCIDAIALMTCMESQLSIAADRTDGLIDGLLSSTVSHSKPIVD WWAEDLTALRIDIFQRVFIAMVARGFKQYALGPVLMLYAQKSLRGLETFGTGRKRIEAAKQEHEKRVVLETIVSLLPKEKHALSVSFLSMLLRAAIYLET TVACRLDLEKRMASQLGQAVLDDLLIPANSFTGDTLYDVDTAHPELSDMERKKVCSIMDCQKLSREACAHAAQNDRLPAQTVVQVLYYEQQRLQDAKTNS GDQSTPRVPLYSTDIHTVSDELSSLKRENQDLKFELVKMKMKMKELEKSTAPAARSTAGSPMSSINSRSADKPPLPPNKKSFINSVSKKLGKLMRPDGLS TSRPRTKPPKDRRHSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10014858 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	2.4	0.9437
AT1G44920			unknown protein		Lus10007720 [exp]	3.0	0.9254
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	4.7	0.9324
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	4.9	0.9171
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10001941 [exp]	7.9	0.8967
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	9.2	0.9048
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	9.5	0.9169
AT3G18870			Mitochondrial transcription te...		Lus10026325 [exp]	9.9	0.9172
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	10.2	0.9248
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	10.2	0.9241

Compare expression of checked genes

Lus10014858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.