Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 442 / 7e-159 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 309 / 2e-106 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 229 / 1e-74 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G18360 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1) AT3G10840 42 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037651 [exp] 476 / 4e-172 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 456 / 2e-164 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 406 / 2e-144 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 300 / 1e-102 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 228 / 5e-74 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10000054 [exp] 220 / 3e-73 AT4G37470 192 / 7e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 223 / 2e-72 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 212 / 7e-70 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 214 / 1e-68 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145000 [exp] 464 / 2e-167 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 462 / 7e-167 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 317 / 2e-109 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 315 / 8e-109 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 253 / 3e-84 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 231 / 2e-75 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 49 / 2e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G081000 [exp] 47 / 4e-06 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 46 / 1e-05 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 43 / 0.0002 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10014859 pacid=23142414 polypeptide=Lus10014859 locus=Lus10014859.g ID=Lus10014859.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTACGCGACGCTCACAACGTCAAGGTGTTGGGCTCCGGTGAGCAGGTCATCGTCCTGGGTCACGGCTTCGGCACCGACCAGTCCGTCTGGA AACACCTCGTCCCTCACTTGGTCGACGATTTCAAGGTCATCGTTTACGACAACATGGGCGCCGGCACCACGAACCCTGATTTCTTCGACTTCGGACGCTA CTCCGGCCTAGAAGGATACGCCTCCGATCTCCTGGCTATTCTTGATGATCTCGGGGTCGAGTCCTGCATCTTCGTCGGCCATTCTGTTTCCGCTATGATC GGCGTTATCGCCTCCATCAGCCGCCCGGAACTCTTCCTCAAACTCATCCTCCTTGCCGGGTCCCCCAGGTATTTGAACGATTCAGATTACTTCGGGGGAT TCGAGCAAGACGATCTAGACCAGTTATTCCAAGCGATGCAGTCCAATTACAAGTCGTGGTGCGGCGGATTTGCTCCTCTGATTGTGGGCGGAGACATGGA ATCAGTCGCAGTACAGGAATTCAGCGGGACGCTGTTCAATATGCGGCCAGATATAGCTCTGAGCATCGCCCAGATCATATTCCATAGCGACATGAGGAGC ATTCTACACATGGTCACCATCCCCTGCCATATCCTGCAGAGCACCAAGGATCTAGCGGTGCCGGTGGTGGTTTCAGAGTATCTGCACCAGCATCTGGGAG GGGAGTCCATCGTCGAGGTCATACCGTCGGATGGTCACCTGCCGCAGCTCAGCTCGCCTGACATCGTGGTCCCGGTGCTGCTCCGGCATATTCGTTGCAA TATTGCTCAGCAGTGA
AA sequence Show only first row Show all	>Lus10014859 pacid=23142414 polypeptide=Lus10014859 locus=Lus10014859.g ID=Lus10014859.BGIv1.0 annot-version=v1.0 MAAVRDAHNVKVLGSGEQVIVLGHGFGTDQSVWKHLVPHLVDDFKVIVYDNMGAGTTNPDFFDFGRYSGLEGYASDLLAILDDLGVESCIFVGHSVSAMI GVIASISRPELFLKLILLAGSPRYLNDSDYFGGFEQDDLDQLFQAMQSNYKSWCGGFAPLIVGGDMESVAVQEFSGTLFNMRPDIALSIAQIIFHSDMRS ILHMVTIPCHILQSTKDLAVPVVVSEYLHQHLGGESIVEVIPSDGHLPQLSSPDIVVPVLLRHIRCNIAQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10014859 [exp]	0	1
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	1.4	0.8377
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	13.8	0.7994
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	24.0	0.8096
AT1G43245			SET domain-containing protein ...		Lus10018874 [exp]	38.6	0.7238
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	38.9	0.7503
AT1G19310			RING/U-box superfamily protein...		Lus10016303 [exp]	48.7	0.7634
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	57.3	0.7206
AT5G12900			unknown protein		Lus10031820 [exp]	65.1	0.7281
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10007737 [exp]	79.0	0.7460
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	80.5	0.7618

Compare expression of checked genes

Lus10014859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.